Stars
upload big files to Zenodo using cURL, jq and bash
CRAGR_v2 is a CRAGR pipeline that handles hotspots calling for multiple replicates using the irreproducible discovery rate (IDR).
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
De novo characterization of cell-free DNA fragmentation hotspots
Foreign Contamination Screening caller scripts and documentation
An easy-to-use, flexible website template for labs.
Fast and native toolsuite for BED file manipulation
A list of deep learning implementations in biology
Fast, integrative fine mapping with functional data
Python初学者（零基础学习Python、Python入门）书籍、视频、资料、社区推荐
A curated list of awesome deep learning applications in the field of computational biology
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
ATAC-seq and DNase-seq processing pipeline
Deep neural networks for predicting CpG methylation
An all-in-one Docker image for deep learning. Contains all the popular DL frameworks (TensorFlow, Theano, Torch, Caffe, etc.)
Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA
Supporting Hierarchical Data Format and Rich Parallel I/O Interface in Spark