8000 Fix nightly CLI build by kathy-t · Pull Request #310 · dockstore/dockstore-cli · GitHub
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Fix nightly CLI build #310

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Merged
merged 2 commits into from
Jul 14, 2025
Merged

Fix nightly CLI build #310

merged 2 commits into from
Jul 14, 2025

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kathy-t
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@kathy-t kathy-t commented Jul 11, 2025

Description
This PR fixes the nightly CLI build that has been failing (can see the failed message in dockstore-dev-alerts). Fixed it by creating a new 1.18.0-alpha.1 webservice tag and removing specific versions of some dependencies that are already specified in the bom-internal. See passing nightly build here https://app.circleci.com/pipelines/github/dockstore/dockstore-cli/2324/workflows/28b21063-0847-4773-a3b4-907b02939f9c

Review Instructions
Nightly CLI build should pass

Issue
n/a

Security
If there are any concerns that require extra attention from the security team, highlight them here.

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@kathy-t kathy-t self-assigned this Jul 11, 2025
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codecov bot commented Jul 11, 2025

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 23.76%. Comparing base (1c36364) to head (5eef52e).
Report is 1 commits behind head on develop.

Additional details and impacted files
@@              Coverage Diff              @@
##             develop     #310      +/-   ##
=============================================
+ Coverage      23.73%   23.76%   +0.03%     
- Complexity       395      397       +2     
=============================================
  Files             48       48              
  Lines           6046     6046              
  Branches         800      800              
=============================================
+ Hits            1435     1437       +2     
  Misses          4420     4420              
+ Partials         191      189       -2     
Flag Coverage Δ
bitbuckettests 0.00% <ø> (ø)
confidentialtooltests 0.00% <ø> (ø)
confidentialworkflowtests 0.00% <ø> (ø)
nonconfidentialtests 23.08% <ø> (+0.03%) ⬆️
singularitytests 0.00% <ø> (ø)
toilintegrationtests 15.29% <ø> (-0.04%) ⬇️
unittests 0.47% <ø> (ø)

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Hmm guess I can't submit my own review comment without having something here

@@ -276,18 +274,6 @@
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-vfs2</artifactId>
<!-- remove after bom is updated with Dockstore or above 1.14.0 -->
<version>2.10.0</version>
<exclusions>
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It's unclear to me if these exclusions should be kept

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I think commons-httpclient, you can try building without it (I think this was a crude way of managing which versions we got).

I think hadoop-hdfs-client can stay excluded (I'm pretty sure we'll never use it, it's integration with the hadoop file system)

@kathy-t kathy-t requested review from denis-yuen and svonworl July 11, 2025 16:37
@@ -276,18 +274,6 @@
<dependency>
<groupId>org.apache.commons</groupId>
& 8000 lt;artifactId>commons-vfs2</artifactId>
<!-- remove after bom is updated with Dockstore or above 1.14.0 -->
<version>2.10.0</version>
<exclusions>
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I think commons-httpclient, you can try building without it (I think this was a crude way of managing which versions we got).

I think hadoop-hdfs-client can stay excluded (I'm pretty sure we'll never use it, it's integration with the hadoop file system)

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@kathy-t kathy-t merged commit 5a6bc50 into develop Jul 14, 2025
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@kathy-t kathy-t deleted the feature/fix-cli-build branch July 14, 2025 13:27
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