8000 Fix DOI migration by kathy-t · Pull Request #5902 · dockstore/dockstore · GitHub
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Fix DOI migration #5902

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Merged
merged 1 commit into from
Jun 3, 2024
Merged

Fix DOI migration #5902

merged 1 commit into from
Jun 3, 2024

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kathy-t
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@kathy-t kathy-t commented Jun 3, 2024

Description
Follow up to #5879. Upon merging it to develop, the Deploy Develop Snapshot GitHub Action failed the generate database documentation step because subquery in FROM must have an alias. This PR fixes that error by adding an alias for the subquery

Review Instructions
Snapshot action should pass

Issue
https://ucsc-cgl.atlassian.net/browse/SEAB-5929
https://ucsc-cgl.atlassian.net/browse/SEAB-6371

Security and Privacy

If there are any concerns that require extra attention from the security team, highlight them here and check the box when complete.

  • Security and Privacy assessed

e.g. Does this change...

  • Any user data we collect, or data location?
  • Access control, authentication or authorization?
  • Encryption features?

Please make sure that you've checked the following before submitting your pull request. Thanks!

  • Check that you pass the basic style checks and unit tests by running mvn clean install
  • Ensure that the PR targets the correct branch. Check the milestone or fix version of the ticket.
  • Follow the existing JPA patterns for queries, using named parameters, to avoid SQL injection
  • If you are changing dependencies, check the Snyk status check or the dashboard to ensure you are not introducing new high/critical vulnerabilities
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  • Ensure that endpoints that only allow privileged access enforce that with the @RolesAllowed annotation
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@kathy-t kathy-t self-assigned this Jun 3, 2024
@kathy-t kathy-t marked this pull request as ready for review June 3, 2024 17:07
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sonarqubecloud bot commented Jun 3, 2024

Quality Gate Passed Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
No data about Coverage
No data about Duplication

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codecov bot commented Jun 3, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 74.53%. Comparing base (e6eea04) to head (460cd1a).

Additional details and impacted files
@@              Coverage Diff              @@
##             develop    #5902      +/-   ##
=============================================
+ Coverage      73.61%   74.53%   +0.91%     
- Complexity      5298     5352      +54     
=============================================
  Files            374      374              
  Lines          19404    19404              
  Branches        2021     2021              
=============================================
+ Hits           14284    14462     +178     
+ Misses          4150     3972     -178     
  Partials         970      970              
Flag Coverage Δ
bitbuckettests 27.04% <ø> (-0.01%) ⬇️
hoverflytests 27.47% <ø> (ø)
integrationtests 56.96% <ø> (ø)
languageparsingtests 11.09% <ø> (ø)
localstacktests 21.63% <ø> (ø)
toolintegrationtests 30.38% <ø> (-0.02%) ⬇️
unit-tests_and_non-confidential-tests 26.04% <ø> (ø)
workflowintegrationtests 38.40% <ø> (+4.19%) ⬆️

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@kathy-t kathy-t merged commit 6370175 into develop Jun 3, 2024
20 checks passed
@kathy-t kathy-t deleted the feature/fix-zenodo-doi-migration branch June 3, 2024 18:50
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