8000 Compression package of quests by yubenjamin2022 · Pull Request #5 · dskoda/quests · GitHub
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Compression package of quests #5

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Merged
merged 59 commits into from
Jun 18, 2025
Merged

Compression package of quests #5

merged 59 commits into from
Jun 18, 2025

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yubenjamin2022
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Various methods of compressing dataset including baseline & msc

yubenjamin2022 and others added 30 commits July 9, 2024 21:22
@yubenjamin2022
First version of compression package
85e343a
@yubenjamin2022
First compression
a59aabc
@yubenjamin2022
compression including msc2 and optimization of compression value & la…
5c3e30c 
…mbda parameters
@yubenjamin2022
Removes assertion that it has to be between 0 & 1
72f7c04
@yubenjamin2022
Compression module added
2d95f20
@yubenjamin2022
Added segment compression algorithm
9c29e13
@yubenjamin2022
Fixed small bug with segment_compress
2aed107
@yubenjamin2022
bug fixes
1be2ac5
@dskoda
reformat
c995170
@dskoda
start refactoring
e0470de
@dskoda
refactor msc
44f1648
@dskoda
added new compression class; diversity is now log scale; refactoring
63b62e0
@dskoda
new (and fast) FPS algorithm
c78656b
@dskoda
pyproject dependencies
a7d45eb
@dskoda
fix bugs with fixed and optimal compression
1dd677f
@dskoda
fix bug with set size
2cc59a0
@dskoda
new refactoring
9600464
@dskoda
change names
6abdabc
@dskoda
baseline compression methods
8314a3e
@yubenjamin2022
DBSCan and k-means added
783b422
@yubenjamin2022
Fixed 1-dim bugs with K-means and DBSCAN
ece80bc
@yubenjamin2022
Changed mean FPS function
dcc56a4
@yubenjamin2022
Fixed error with duplicate points in the optimizer dbscan
ab4f2be
@yubenjamin2022
Bugfix with optimal compression method, allow_duplicate_points = True
a153b96
@yubenjamin2022
Added output to optimal compression method, k-means if statement for …
89dc204 
…# labels
@yubenjamin2022
Implemented parallelization of msc
1e0f030
@yubenjamin2022
replaced fpsample with numpy mean fps
7bc278d
@yubenjamin2022
fixed bug with mean fps
0fd6bca
@yubenjamin2022
added mask to mean_fps to ensure unique points chosen
eecbce3
@yubenjamin2022
changed mean fps output to list instead of np array because that affe…
8253f8d 
…cts entropy/diversity calculation
yubenjamin2022 and others added 27 commits January 16, 2025 15:49
@yubenjamin2022
Merge branch 'dskoda:main' into main
0844d20
@dskoda
k-means entropy as additional baseline
efcac7e
@dskoda
improved algorithm for MSC
18c5b07
@yubenjamin2022
msct
7559b75
@dskoda
small refactor of the compression code
8213122
@dskoda
compression cli
080c198
@dskoda
compress command
e6c908f
@dskoda
command for compression
c86ca35
@yubenjamin2022
Cleaning up unused functions, removing unused packages (process and m…
2440b85 
…inimum_set_coverage, and added recursive implementation of the compression algorithm
@yubenjamin2022
get all metrics
a6d065f
@yubenjamin2022
Merge branch 'dskoda:main' into main
dcd1cbe
@yubenjamin2022
Merge branch 'dskoda:main' into main
b4326cd
@yubenjamin2022
Update entropy.py
9bf0cb4
@yubenjamin2022
Update entropy.py
2330086
@dskoda
refactor compression cli
56652f6
@dskoda
black reformatting
9459619
@dskoda
allow serialization in compress
82ea378
@dskoda
refactoring
618c5af
@dskoda
black
0cee8f2
@dskoda
summary statistics from compressed dataset
b3c3b4a
@dskoda
dataset compression readme
e63e0d1
@dskoda
remove dependency
43e5da9
@dskoda
default dtype is float64 for accuracy
8657360
@dskoda
metrics to compute entropy/diversity in a faster way; remove old file
4d9191a
@dskoda
refactor imports
900771d
@dskoda
improve calculation of metrics
8e2f0aa
@dskoda
readme
5e283b4
@dskoda dskoda self-requested a review June 18, 2025 13:31
@dskoda dskoda self-assigned this Jun 18, 2025
@dskoda dskoda merged commit 7ea898d into dskoda:main Jun 18, 2025
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