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@evotools

evotools

Tools to support the study of genome and epigenome evolution and their relevance to disease.

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  1. nf-LO nf-LO Public

    A Nextflow workflow to generate lift over files for any pair of genomes

    Nextflow 65 10

  2. hapbin hapbin Public

    Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)

    C++ 44 19

  3. CattleGraphGenomePaper CattleGraphGenomePaper Public

    Set of script for the paper on the cattle graph genome

    Shell 13 1

  4. wBuffaloVsCow wBuffaloVsCow Public

    Code accompanying manuscript "Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication"

    R 3 1

  5. nSPECTRa nSPECTRa Public

    Nextflow workflow to compute the mutation spectra

    Nextflow 3

  6. CattleOManalyses CattleOManalyses Public

    Script and some results from the Optical mapping SV analyses

    Shell 1

Repositories

Showing 10 of 12 repositories
  • bovreg-twas-suite Public

    bovreg-twas-suite is a modular Nextflow pipeline suite for performing transcriptome-wide association studies (TWAS) in cattle. It includes workflows to generate imputed genotypes and expression inputs from RNA-seq data for model training, and to run TWAS using trained models to map trait-associated genes.

    evotools/bovreg-twas-suite’s past year of commit activity
    0 MIT 0 0 0 Updated May 2, 2025
  • nf-LO Public

    A Nextflow workflow to generate lift over files for any pair of genomes

    evotools/nf-LO’s past year of commit activity
    Nextflow 65 MIT 10 0 2 Updated Apr 4, 2025
  • functional-variant-prediction Public

    The machine learning pipeline for functional variant prediction

    evotools/functional-variant-prediction’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 21, 2025
  • nf-VarAnno Public

    A cross-species variant annotation pipeline based on Nextflow

    evotools/nf-VarAnno’s past year of commit activity
    Python 0 1 0 0 Updated Mar 18, 2025
  • nSPECTRa Public

    Nextflow workflow to compute the mutation spectra

    evotools/nSPECTRa’s past year of commit activity
    Nextflow 3 MIT 0 0 0 Updated Mar 12, 2025
  • CattleGraphGenomePaper Public

    Set of script for the paper on the cattle graph genome

    evotools/CattleGraphGenomePaper’s past year of commit activity
    Shell 13 1 0 0 Updated Jan 10, 2023
  • GCRF_tutorial Public

    Material for the bioinformatics tutorial held in Tanzania in May 2022

    evotools/GCRF_tutorial’s past year of commit activity
    HTML 0 0 0 0 Updated May 24, 2022
  • CattleOManalyses Public

    Script and some results from the Optical mapping SV analyses

    evotools/CattleOManalyses’s past year of commit activity
    Shell 1 MIT 0 0 0 Updated May 2, 2022
  • wBuffaloVsCow Public

    Code accompanying manuscript "Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication"

    evotools/wBuffaloVsCow’s past year of commit activity
    R 3 GPL-3.0 1 0 0 Updated Aug 21, 2020
  • hapbin Public

    Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)

    evotools/hapbin’s past year of commit activity
    C++ 44 GPL-3.0 19 15 2 Updated Oct 24, 2019
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