8000 erebboah (Liz Rebboah, PhD) · GitHub
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Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

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  1. mortazavilab/parse_pipeline mortazavilab/parse_pipeline Public

    Custom code for processing Parse Bio snRNA-seq data generated by the Mortazavi lab at UCI

    Jupyter Notebook 10 2

  2. bulk_atac_pipeline bulk_atac_pipeline Public

    Pipeline adapted from Klebea Carvalho and Dr. Rabi Murad from the Mortazavi lab, for remote server w/ SLURM scheduler.

    R

  3. enc4_mouse_paper enc4_mouse_paper Public

    Code for the ENCODE4 single-nucleus mouse analysis.

    Jupyter Notebook 5

  4. mirna_pipeline mirna_pipeline Public

    Code for processing microRNA-seq data from fastq

    Python 1

  5. merscope_analysis merscope_analysis Public

    Analysis of pilot MERSCOPE (MERFISH) data in mouse pituitary and hypothalamus

    Jupyter Notebook

  6. mortazavilab/cosmos-cluster6 mortazavilab/cosmos-cluster6 Public

    UCI COSMOS Cluster 6: Genes, Genomes, and Skeletal Muscle Dystrophies

    Jupyter Notebook 1

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