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codex-agent Public
Forked from openai/codexLightweight coding agent that runs in your terminal
TypeScript Apache License 2.0 UpdatedMay 19, 2025 -
ISB-CGC-HTAN-Demos Public
Forked from isb-cgc/ISB-CGC-HTAN-DemosJupyter Notebook Apache License 2.0 UpdatedMay 14, 2025 -
SPAC Public
Forked from FNLCR-DMAP/SCSAWorkflow20250517_spac
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 13, 2025 -
warp Public
10000 Forked from broadinstitute/warpWDL Analysis Research Pipelines
WDL BSD 3-Clause "New" or "Revised" License UpdatedMay 2, 2025 -
spatialvi Public
Forked from nf-core/spatialviPipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Nextflow MIT License UpdatedApr 30, 2025 -
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picard Public
Forked from broadinstitute/picardA set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Java MIT License UpdatedApr 17, 2025 -
SCWorkflow Public
Forked from NIDAP-Community/SCWorkflowWorkflow Package for Analysis of Single Cell Data
R MIT License UpdatedApr 8, 2025 -
HDF5 for Python -- The h5py package is a Pythonic interface to the HDF5 binary data format.
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 31, 2025 -
Spotiphy Public
Forked from jyyulab/SpotiphySpot pseudo-Imager on top of histology
Jupyter Notebook Apache License 2.0 UpdatedMar 31, 2025 -
spatialGE Public
Forked from FridleyLab/spatialGEMethods for visualization and analysis of spatially-resolved gene expression
R Other UpdatedMar 19, 2025 -
py-shiny Public
Forked from posit-dev/py-shinyShiny for Python
Python MIT License UpdatedMar 9, 2025 -
SPAC_Shiny Public
Forked from FNLCR-DMAP/SPAC_ShinyThe Shiny Interactive Realtime Dashboard for SPAC
Python GNU General Public License v3.0 UpdatedNov 16, 2024 -
Hands-On-Large-Language-Models-CN Public
Forked from bbruceyuan/Hands-On-Large-Language-Models-CN中文翻译的 Hands-On-Large-Language-Models (hands-on-llms)，动手学习大模型
Jupyter Notebook Apache License 2.0 UpdatedNov 9, 2024 -
Hands-On-Large-Language-Models Public
Forked from HandsOnLLM/Hands-On-Large-Language-ModelsOfficial code repo for the O'Reilly Book - "Hands-On Large Language Models"
Jupyter Notebook Apache License 2.0 UpdatedOct 18, 2024 -
SPAC_demo_workflow Public
Forked from FNLCR-DMAP/SPAC_demo_workflowDemo workflow with SPAC package
Jupyter Notebook BSD 2-Clause "Simplified" License UpdatedAug 13, 2024 -
spatialdata-notebooks Public
Forked from scverse/spatialdata-notebooksJupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedAug 9, 2024 -
hamilton Public
Forked from apache/hamiltonHamilton helps data scientists and engineers define testable, modular, self-documenting dataflows, that encode lineage/tracing and metadata. Runs and scales everywhere python does.
Jupyter Notebook BSD 3-Clause Clear License UpdatedAug 9, 2024 -
vectordb-recipes Public
Forked from lancedb/vectordb-recipesHigh quality resources & applications for LLMs, multi-modal models and VectorDBs
Jupyter Notebook Apache License 2.0 UpdatedAug 6, 2024 -
reactive-web-dashboards-with-shiny-course Public
Forked from talkpython/reactive-web-dashboards-with-shiny-coursePython MIT License UpdatedJul 10, 2024 -
GraphMemory Public
Forked from bradAGI/GraphMemoryGraphRAG database - hybrid graph / vector db
Python MIT License UpdatedJun 22, 2024 -
MedRAG Public
Forked from Teddy-XiongGZ/MedRAGCode for the MedRAG toolkit
Python Other UpdatedJun 20, 2024 -
LLaVA-Med Public
Forked from microsoft/LLaVA-MedLarge Language-and-Vision Assistant for Biomedicine, built towards multimodal GPT-4 level capabilities.
Python Other UpdatedMay 23, 2024 -
SpatialNF Public
Forked from aertslab/SpatialNFSpatial transcriptomics NextFlow pipelines
Python GNU General Public License v3.0 UpdatedMay 16, 2024 -
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starling Public
Forked from camlab-bioml/starlingSegmentation error aware clustering for multiplexed imaging
Python Other UpdatedApr 25, 2024 -
rapids_singlecell Public
Forked from scverse/rapids_singlecellRapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
Python MIT License UpdatedApr 7, 2024 -
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Detection-with-Transformers Public
Forked from facebookresearch/detrEnd-to-End Object Detection with Transformers
Python Apache License 2.0 UpdatedMar 12, 2024 -
GeneGPT Public
Forked from ncbi/GeneGPTCode and data for GeneGPT.
Python Other UpdatedFeb 14, 2024
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