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Annotation_scripts
Annotation_scripts
 
 
SNP_calling_scripts
SNP_calling_scripts
 
 
BUSCO-Supermatrix.md
BUSCO-Supermatrix.md
 
 
Cafe-tree.md
Cafe-tree.md
 
 
ComplexGenomeAnnotation.md
ComplexGenomeAnnotation.md
 
 
Docker_image_usage.md
Docker_image_usage.md
 
 
Docker_installation_instruction.md
Docker_installation_instruction.md
 
 
GBS-snap.md
GBS-snap.md
 
 
Install_Anaconda_and_Perl_modules.md
Install_Anaconda_and_Perl_modules.md
 
 
JBrowse_installation.md
JBrowse_installation.md
 
 
Juicer_installation.md
Juicer_installation.md
 
 
Juicer_usage.md
Juicer_usage.md
 
 
LICENSE
LICENSE
 
 
README.md
README.md
 
 
REPET_usage.md
REPET_usage.md
 
 
_config.yml
_config.yml
 
 
assembly.md
assembly.md
 
 
background.md
background.md
 
 
change_pass.md
change_pass.md
 
 
classify_prototype.md
classify_prototype.md
 
 
funannotation_installation.md
funannotation_installation.md
 
 
install_BEAST.md
install_BEAST.md
 
 
install_BEAST2.md
install_BEAST2.md
 
 
install_PHYLUCE.md
install_PHYLUCE.md
 
 
install_QIIMEE.md
install_QIIMEE.md
 
 
install_maker.md
install_maker.md
 
 
install_mrbayes.md
install_mrbayes.md
 
 
install_phyml.md
install_phyml.md
 
 
install_raxml.md
install_raxml.md
 
 
local_perl.md
local_perl.md
 
 
local_python.md
local_python.md
 
 
login_server.md
login_server.md
 
 
mrbayes-3.2.6.tar.gz
mrbayes-3.2.6.tar.gz
 
 
pipe_annotation.md
pipe_annotation.md
 
 

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Getting started using the Linux server

Login to the Server
Change your password
Running programs in background

Help Running Programs on our Linux Servers

Installation of Local Perl Modules
Installation of Local Python Modules

Installation of Programs for Sequence Data Processing

Installation of PHYLUCE

Installation of Programs for Phylogenetic Reconstruction

Installation of BEAST (single core and multi core)
Installation of BEAST2 (single core and multi core)
Installation of MrBayes (single core and multi core)
Installation of Phyml (single core and multi core)
Installation of RAxML (single core and multi core)

Installation of Programs for Microbiome analyses

Installation of QIIME

Genome Assembly

Genomes Assembly

BUSCO and Phylogeny analysis

BUSCO and Phulogney pipeline
Gene family evolution pipeline

SNP Calling for GBS Data

SNP Calling for GBS Data Pipeline

Genome Annotation

Install Anaconda and Perl modules
Installation of MAKER
Annotation of Lichen Genomes
Annotation of Complex Genomes
Funannotation installation

TE Annotation

REPET instruction

Docker Engine

Docker Basic Instruction
Docker image usage

Genome visualization using Apollo

JBrowse installation

Juicer installation and usage

Juicer installation
Juicer usage

About

Tips and tricks for your daily life on our servers

felixgrewe.github.io/linux_cookbook/

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Readme

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GPL-3.0 license
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