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Storage
The working directory includes a folder titled saves, in which all saved output files of any command will be stored (within their own appropriately named directory). What files are saved depends on the command used, but here are some common files:
Call.txt
This file contains the original call that issued the command.
cluster_indices.npy
This file contains a list of list of indices corresponding to the clusters as computed by the algorithm. Can be re-used for further commands using the -c argument.
cluster_labels.npy
This file contains a list of labels corresponding to the cluster each index belongs to, as computed by the algorithm.
info.p
This archive contains all the information (including cluster_indices, etc) of the end result of a command. In order to view the data, load the file using the pickle library and search through the resulting dictionary.
*.py
One or two .py files can be found in the saved folders. Those correspond to a copy of the parameter files used when issuing the command. Usually, those two files will be default.py and <para_name>.py where <para_name> was given to the -p argument at the time of running the script. See more in the parameter files wiki page.