Stars
Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)
A tool to build a website to browse hundreds or thousands of GWAS.
Code supporting analyses in paper on fine-mapping AD loci
High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
Improving pathogenicity prediction of missense variants by using AlphaFold-derived features
The fastai book, published as Jupyter Notebooks
R package for the format conversion from bgen to gds
Watershed implementation for African American samples from GTEx
Drug gene set analysis (DRUGSETS) is a command line interface (CLI) tool implemented in python to perform genetically informed drug repositioning using drug gene set analysis in MAGMA.
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
identifying disease critical cell types and programs from single cell RNAseq
R-package for structural equation modeling based on GWAS summary data
Hypothesis Prioritisation in multi-trait Colocalization
A collection of various utilities for GWAS summary statistics
Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
A deep learning-based tool to identify splice variants
The hap-ibd program detects identity-by-descent segments in phased genotype data.
FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the age of IBD segments and scales to large biobank datasets. htt…
A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
Extracting meaningful health information from large accelerometer datasets
Colocalization analysis of genetic association signals
R script that performs gene-set or gene property analysis using TWAS results.