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@gustaveroussy

Gustave Roussy

Gustave Roussy

Popular repositories Loading

  1. sopa sopa Public

    Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

    Python 205 34

  2. EaCoN EaCoN Public

    Easy Copy Number !

    R 21 14

  3. FG-Lab FG-Lab Public

    R 10 5

  4. CFS CFS Public

    R package using ICA based method for spatial transcriptomics analysis (Visium/Slide-seq/CosMX/MERSCOPE)

    R 8 3

  5. MetaPRISM_Public MetaPRISM_Public Public

    Code support all the analyses and figures for the MetaPRISM paper.

    Python 7 1

  6. single-cell single-cell Public

    R 6 4

Repositories

Showing 10 of 55 repositories
  • EaCoNiC Public

    Easy Copy Number, in Cohort !

    gustaveroussy/EaCoNiC’s past year of commit activity
    R 0 MIT 0 1 0 Updated Jul 12, 2025
  • EaCoN Public

    Easy Copy Number !

    gustaveroussy/EaCoN’s past year of commit activity
    R MIT 14 7 0 Updated Jul 11, 2025
  • prismtoolbox Public

    Toolbox for histopathology image analysis

    gustaveroussy/prismtoolbox’s past year of commit activity
    Python 6 BSD-3-Clause 0 0 0 Updated Jul 10, 2025
  • sopa Public

    Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

    gustaveroussy/sopa’s past year of commit activity
    Python 205 BSD-3-Clause 34 26 (1 issue needs help) 3 Updated Jul 8, 2025
  • training_bigr Public

    This repository containing all trainings from bioinformatics platform of Gustave Roussy

    gustaveroussy/training_bigr’s past year of commit activity
    HTML 0 0 0 0 Updated Jun 19, 2025
  • single-cell Public
    gustaveroussy/single-cell’s past year of commit activity
    R 6 GPL-3.0 4 0 1 Updated Mar 16, 2025
  • bigr_rna_editing Public

    This pipeline uses SPRINT and RNAEditingIndexer to identify editing event from RNA-seq

    gustaveroussy/bigr_rna_editing’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Mar 10, 2025
  • PipelineAgentService Public

    PipelineAgentService is a large language model (LLM)-based application designed for the automated management of data processing tasks.

    gustaveroussy/PipelineAgentService’s past year of commit activity
    Python 2 MIT 2 0 0 Updated Mar 5, 2025
  • LaurieMengerLab Public
    gustaveroussy/LaurieMengerLab’s past year of commit activity
    HTML 0 BSD-3-Clause 0 0 0 Updated Feb 3, 2025
  • FG-Lab Public
    gustaveroussy/FG-Lab’s past year of commit activity
    R 10 5 3 0 Updated Jan 29, 2025
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