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Thanks for the wonderful tool!
Not an issue but a request for help.
I am working with Merscope data (1000 genes panel) and segmented with different options.
I have never been able to plot my data using spatialdata-plotting functions.
Not because I get an error but because it stalls on executing the function for hours without plotting.
Then after hourse I give up and quit the execution.
Number of cells is around 100,000.
sdata.pl.render_images("202411281203_VMSC10702_region_0_z3").pl.render_shapes(
"baysor_boundaries",
outline_alpha=1,
fill_alpha=0,
outline_color="#fff"
).pl.show("global")
I also tried to subset using
sdata_sub = sdata.query.bounding_box(
axes=["y", "x"], min_coordinate=[0, 0], max_coordinate=[1000, 1000], target_coordinate_system="global"
)
But this does keep the segmentation boundaries that I had in the full object.
Thanks for the help
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