mitoMorph provides a set of tools developed to aid with the analysis of mitochondria as labelled in light microscopy images. These tools are implemented as a toolset for the ImageJ/Fiji software.
Copy the files mitoMorph Tool.ijm and mask2convex_hull.groovy inside the Fiji application directory. Specifically, the toolset file mitoMorph Tool.ijm must be copied in the subdirectory /macros/toolsets/ and the script mask2convex_hull.groovy in a user-generated directory inside /scripts/.
The tools depend on additional functions available by activating the ImageScience update site.
More information is available in the User Guide.
A complete User Guide can be downloaded in PDF format.
Yim A., Koti P., Bonnard A., Marchiano F., Duerrbaum M.,Garcia-Perez C., Villaveces J., Gamal S., Cardone G., Perocchi F., Storchova Z., Habermann B.H., mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations Nucleic Acid Res 2020 48:65-632 https://doi.org/10.1093/nar/gkz1128
This package is free and open source software, licensed under GPL.