8000 Test all empty matrix conversions on Reference by upsj · Pull Request #560 · ginkgo-project/ginkgo · GitHub
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Test all empty matrix conversions on Reference #560

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Merged
merged 2 commits into from
Jun 10, 2020
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@upsj upsj commented Jun 7, 2020

This also fixes the found issues:

  • The SparsityCsr value is sometimes uninitialized
  • Dense convert_to skips empty matrices
  • Conversions to sellp read from empty arrays (this bug is also present in the omp executor)

Closes #380

@upsj upsj added is:bug Something looks wrong. reg:testing This is related to testing. mod:core This is related to the core module. mod:reference This is related to the reference module. 1:ST:ready-for-review This PR is ready for review labels Jun 7, 2020
@upsj upsj added this to the Ginkgo 1.2.0 milestone Jun 7, 2020
@upsj upsj self-assigned this Jun 7, 2020
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codecov bot commented Jun 7, 2020

Codecov Report

Merging #560 into develop will increase coverage by 0.25%.
The diff coverage is 98.10%.

Impacted file tree graph

@@             Coverage Diff             @@
##           develop     #560      +/-   ##
===========================================
+ Coverage    84.06%   84.32%   +0.25%     
===========================================
  Files          292      292              
  Lines        19444    19670     +226     
===========================================
+ Hits         16345    16586     +241     
+ Misses        3099     3084      -15     
Impacted Files Coverage Δ
core/test/matrix/sellp.cpp 98.27% <ø> (ø)
core/test/matrix/sparsity_csr.cpp 98.21% <ø> (ø)
omp/matrix/dense_kernels.cpp 5.55% <0.00%> (-0.04%) ⬇️
include/ginkgo/core/matrix/hybrid.hpp 69.74% <50.00%> (+2.22%) ⬆️
include/ginkgo/core/matrix/sparsity_csr.hpp 85.71% <75.00%> (-6.88%) ⬇️
core/matrix/dense.cpp 90.12% <100.00%> (-0.13%) ⬇️
include/ginkgo/core/matrix/sellp.hpp 64.10% <100.00%> (+10.25%) ⬆️
omp/test/matrix/dense_kernels.cpp 100.00% <100.00%> (ø)
reference/matrix/csr_kernels.cpp 99.47% <100.00%> (+<0.01%) ⬆️
reference/matrix/dense_kernels.cpp 100.00% <100.00%> (ø)
... and 13 more

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@pratikvn pratikvn left a comment

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LGTM!

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@tcojean tcojean left a comment

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LGTM! Some small comments.

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@fritzgoebel fritzgoebel left a comment

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LGTM

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@yhmtsai yhmtsai left a comment

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LGTM

@upsj upsj added 1:ST:ready-to-merge This PR is ready to merge. and removed 1:ST:ready-for-review This PR is ready for review mod:reference This is related to the reference module. labels Jun 9, 2020
upsj added 2 commits June 9, 2020 20:03
This also fixes the found issues:
* SparsityCsr value is sometimes uninitialized
* Dense convert_to skips empty matrices
* Conversions to sellp read from empty arrays
@upsj upsj force-pushed the test_empty_conversion branch from cf75bd3 to 0e6c6aa Compare June 9, 2020 18:03
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Kudos, SonarCloud Quality Gate passed!

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities (and Security Hotspot 0 Security Hotspots to review)
Code Smell A 0 Code Smells

71.4% 71.4% Coverage
0.0% 0.0% Duplication

warning The version of Java (1.8.0_121) you have used to run this analysis is deprecated and we will stop accepting it from October 2020. Please update to at least Java 11.
Read more here

@upsj upsj merged commit 251d856 into develop Jun 10, 2020
@upsj upsj deleted the test_empty_conversion branch June 10, 2020 06:09
@tcojean tcojean mentioned this pull request Jun 23, 2020
tcojean pushed a commit that referenced this pull request Jul 7, 2020
The Ginkgo team is proud to announce the new minor release of Ginkgo version
1.2.0. This release brings full HIP support to Ginkgo, new preconditioners
(ParILUT, ISAI), conversion between double and float for all LinOps, and many
more features and fixes.

Supported systems and requirements:
+ For all platforms, cmake 3.9+
+ Linux and MacOS
  + gcc: 5.3+, 6.3+, 7.3+, all versions after 8.1+
  + clang: 3.9+
  + Intel compiler: 2017+
  + Apple LLVM: 8.0+
  + CUDA module: CUDA 9.0+
  + HIP module: ROCm 2.8+
+ Windows
  + MinGW and CygWin: gcc 5.3+, 6.3+, 7.3+, all versions after 8.1+
  + Microsoft Visual Studio: VS 2017 15.7+
  + CUDA module: CUDA 9.0+, Microsoft Visual Studio
  + OpenMP module: MinGW or CygWin.


The current known issues can be found in the [known issues page](https://github.com/ginkgo-project/ginkgo/wiki/Known-Issues).


# Additions
Here are the main additions to the Ginkgo library. Other thematic additions are listed below.
+ Add full HIP support to Ginkgo [#344](#344), [#357](#357), [#384](#384), [#373](#373), [#391](#391), [#396](#396), [#395](#395), [#393](#393), [#404](#404), [#439](#439), [#443](#443), [#567](#567)
+ Add a new ISAI preconditioner [#489](#489), [#502](#502), [#512](#512), [#508](#508), [#520](#520)
+ Add support for ParILUT and ParICT factorization with ILU preconditioners [#400](#400)
+ Add a new BiCG solver [#438](#438)
+ Add a new permutation matrix format [#352](#352), [#469](#469)
+ Add CSR SpGEMM support [#386](#386), [#398](#398), [#418](#418), [#457](#457)
+ Add CSR SpGEAM support [#556](#556)
+ Make all solvers and preconditioners transposable [#535](#535)
+ Add CsrBuilder and CooBuilder for intrusive access to matrix arrays [#437](#437)
+ Add a standard-compliant allocator based on the Executors [#504](#504)
+ Support conversions for all LinOp between double and float [#521](#521)
+ Add a new boolean to the CUDA and HIP executors to control DeviceReset (default off) [#557](#557)
+ Add a relaxation factor to IR to represent Richardson Relaxation [#574](#574)
+ Add two new stopping criteria, for relative (to `norm(b)`) and absolute residual norm [#577](#577)

### Example additions
+ Templatize all examples to simplify changing the precision [#513](#513)
+ Add a new adaptive precision block-Jacobi example [#507](#507)
+ Add a new IR example [#522](#522)
+ Add a new Mixed Precision Iterative Refinement example [#525](#525)
+ Add a new example on iterative trisolves in ILU preconditioning [#526](#526), [#536](#536), [#550](#550)

### Compilation and library changes
+ Auto-detect compilation settings based on environment [#435](#435), [#537](#537)
+ Add SONAME to shared libraries [#524](#524)
+ Add clang-cuda support [#543](#543)

### Other additions
+ Add sorting, searching and merging kernels for GPUs [#403](#403), [#428](#428), [#417](#417), [#455](#455)
+ Add `gko::as` support for smart pointers [#493](#493)
+ Add setters and getters for criterion factories [#527](#527)
+ Add a new method to check whether a solver uses `x` as an initial guess [#531](#531)
+ Add contribution guidelines [#549](#549)

# Fixes
### Algorithms
+ Improve the classical CSR strategy's performance [#401](#401)
+ Improve the CSR automatical strategy [#407](#407), [#559](#559)
+ Memory, speed improvements to the ELL kernel [#411](#411)
+ Multiple improvements and fixes to ParILU [#419](#419), [#427](#427), [#429](#429), [#456](#456), [#544](#544)
+ Fix multiple issues with GMRES [#481](#481), [#523](#523), [#575](#575)
+ Optimize OpenMP matrix conversions [#505](#505)
+ Ensure the linearity of the ILU preconditioner [#506](#506)
+ Fix IR's use of the advanced apply [#522](#522)
+ Fix empty matrices conversions and add tests [#560](#560)

### Other core functionalities
+ Fix complex number support in our math header [#410](#410)
+ Fix CUDA compatibility of the main ginkgo header [#450](#450)
+ Fix isfinite issues [#465](#465)
+ Fix the Array::view memory leak and the array/view copy/move [#485](#485)
+ Fix typos preventing use of some interface functions [#496](#496)
+ Fix the `gko::dim` to abide to the C++ standard [#498](#498)
+ Simplify the executor copy interface [#516](#516)
+ Optimize intermediate storage for Composition [#540](#540)
+ Provide an initial guess for relevant Compositions [#561](#561)
+ Better management of nullptr as criterion [#562](#562)
+ Fix the norm calculations for complex support [#564](#564)

### CUDA and HIP specific
+ Use the return value of the atomic operations in our wrappers [#405](#405)
+ Improve the portability of warp lane masks [#422](#422)
+ Extract thread ID computation into a separate function [#464](#464)
+ Reorder kernel parameters for consistency [#474](#474)
+ Fix the use of `pragma unroll` in HIP [#492](#492)

### Other
+ Fix the Ginkgo CMake installation files [#414](#414), [#553](#553)
+ Fix the Windows compilation [#415](#415)
+ Always use demangled types in error messages [#434](#434), [#486](#486)
+ Add CUDA header dependency to appropriate tests [#452](#452)
+ Fix several sonarqube or compilation warnings [#453](#453), [#463](#463), [#532](#532), [#569](#569)
+ Add shuffle tests [#460](#460)
+ Fix MSVC C2398 error [#490](#490)
+ Fix missing interface tests in test install [#558](#558)

# Tools and ecosystem
### Benchmarks
+ Add better norm support in the benchmarks [#377](#377)
+ Add CUDA 10.1 generic SpMV support in benchmarks [#468](#468), [#473](#473)
+ Add sparse library ILU in benchmarks [#487](#487)
+ Add overhead benchmarking capacities [#501](#501)
+ Allow benchmarking from a matrix list file [#503](#503)
+ Fix benchmarking issue with JSON and non-finite numbers [#514](#514)
+ Fix benchmark logger crashers with OpenMP [#565](#565)

### CI related
+ Improvements to the CI setup with HIP compilation [#421](#42
6D40
1), [#466](#466)
+ Add MacOSX CI support [#470](#470), [#488](#488)
+ Add Windows CI support [#471](#471), [#488](#488), [#510](#510), [#566](#566)
+ Use sanitizers instead of valgrind [#476](#476)
+ Add automatic container generation and update facilities [#499](#499)
+ Fix the CI parallelism settings [#517](#517), [#538](#538), [#539](#539)
+ Make the codecov patch check informational [#519](#519)
+ Add support for LLVM sanitizers with improved thread sanitizer support [#578](#578)

### Test suite
+ Add an assertion for sparsity pattern equality [#416](#416)
+ Add core and reference multiprecision tests support [#448](#448)
+ Speed up GPU tests by avoiding device reset [#467](#467)
+ Change test matrix location string [#494](#494)

### Other
+ Add Ginkgo badges from our tools [#413](#413)
+ Update the `create_new_algorithm.sh` script [#420](#420)
+ Bump copyright and improve license management [#436](#436), [#433](#433)
+ Set clang-format minimum requirement [#441](#441), [#484](#484)
+ Update git-cmake-format [#446](#446), [#484](#484)
+ Disable the development tools by default [#442](#442)
+ Add a script for automatic header formatting [#447](#447)
+ Add GDB pretty printer for `gko::Array` [#509](#509)
+ Improve compilation speed [#533](#533)
+ Add editorconfig support [#546](#546)
+ Add a compile-time check for header self-sufficiency [#552](#552)


# Related PR: #583
@upsj upsj mentioned this pull request Oct 11, 2021
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Make all conversions of empty matrices work
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