-
-
nf-cgl-cgs Public
Forked from Clinical-Genomics-Laboratory/nf-cgl-cgsNextflow workflow for running DRAGEN based constitutional Genome Sequence (cGS) analysis pipelines.
Nextflow MIT License UpdatedMar 31, 2025 -
bacterial-genomics-assembly-workflow Public
Forked from bacterial-genomics/wf-paired-end-illumina-assemblypathogen agnostic general workflow for genome assembly of Illumina paired-end sequence data
Nextflow Apache License 2.0 UpdatedAug 23, 2024 -
docker-dragen Public
Forked from apldx/docker-dragenDragen for Docker
Dockerfile UpdatedJul 22, 2024 -
configs Public
Forked from nf-core/configsConfig files used to define parameters specific to compute environments at different Institutions
Nextflow MIT License UpdatedJun 14, 2024 -
wf-assembly-snps Public
Forked from chrisgulvik/wf-assembly-snpsNextflow Apache License 2.0 UpdatedMar 19, 2024 -
wf-aai Public
Forked from chrisgulvik/wf-aaiPerform average amino acid identity (AAI) on 2 or more proteomes.
Shell Apache License 2.0 UpdatedFeb 28, 2024 -
wf-ani Public
Forked from chrisgulvik/wf-aniPerform Average Nucleotide Identity (ANI) on FastA/Genbank files.
Shell Apache License 2.0 UpdatedFeb 28, 2024 -
wf-pocp Public archive
WARN: This pipeline has been merged with wf-aai. Compute Percentage of Conserved Proteins (POCP) between FastA and GenBank files
Nextflow Apache License 2.0 UpdatedFeb 23, 2024 -
Netflix-to-Trakt-Import Public
Forked from jensb89/Netflix-to-Trakt-ImportSynchronize/Import the viewing history from Netflix to trakt.tv
Python UpdatedFeb 20, 2024 -
tools Public
Forked from nf-core/toolsPython package with helper tools for the nf-core community.
Python MIT License UpdatedFeb 13, 2024 -
wf-paired-end-illumina-assembly Public archive
WARN: Repository has moved. Use the link below or link at the top of README to access the most up to date assembly pipeline!
-
taxtriage Public
Forked from jhuapl-bio/taxtriageTaxTriage is designed in concordance with CDC recommendations to provide clinical environments the necessary tools to generate classification reports (using Kraken2) in a metagenomics scope. It is …
Nextflow Other UpdatedJan 31, 2024 -
test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedJan 23, 2024 -
mag Public
Forked from nf-core/magAssembly and binning of metagenomes
Nextflow MIT License UpdatedNov 2, 2023 -
krakenSankey Public
Forked from lorenzgerber/krakenSankeya re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser
R UpdatedSep 25, 2023 -
nf-co.re Public
Forked from nf-core/websiteCode and files for the main nf-core website.
PHP MIT License UpdatedJul 6, 2023 -
miga Public
Forked from bio-miga/migaMiGA: Microbial Genomes Atlas
Ruby Artistic License 2.0 UpdatedJun 6, 2023 -
bio-agents_and_precip Public
Using public data to look at correlations between agents and precipitation.
Python UpdatedApr 26, 2023 -
-
-
-
-
lepto-in-silico-pcr Public
Using PCR primers from Barragan et al. (2016) to see if they are able to detect all pathogenic, intermediate, and saprophytic Leptospira. Source = High Leptospira Diversity in Animals and Humans Co…
Jupyter Notebook UpdatedJun 29, 2022 -
metagenomics-reproducibility Public
Reproducing results from a published metagenomic paper.
UpdatedAug 30, 2021 -
{{ message }}