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@huishenlab

Shen Lab at VAI

GitHub Repository for Software Developed in the Shen Lab

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  1. biscuit biscuit Public

    Forked from zhou-lab/biscuit

    BISulfite-seq CUI Toolkit

    C 19 7

  2. Biscuit_Snakemake_Workflow Biscuit_Snakemake_Workflow Public

    Forked from vari-bbc/Biscuit_Snakemake_Workflow

    Snakemake Workflow For Running Biscuit https://github.com/huishenlab/biscuit

    Python 2 8

  3. bisplotti bisplotti Public

    Plotting package for bisulfite sequencing and methylation arrays

    R 7 6

  4. dupsifter dupsifter Public

    WGBS/WGS PCR Duplicate Marking

    C 5 2

  5. STORMqc STORMqc Public

    QC pipeline for STORM data

    Python 1 1

Repositories

Showing 10 of 20 repositories
  • tranquilizer Public
    huishenlab/tranquilizer’s past year of commit activity
    Python 0 2 0 0 Updated May 14, 2025
  • Biscuit_Snakemake_Workflow Public Forked from vari-bbc/Biscuit_Snakemake_Workflow

    Snakemake Workflow For Running Biscuit https://github.com/huishenlab/biscuit

    huishenlab/Biscuit_Snakemake_Workflow’s past year of commit activity
    Python 2 GPL-3.0 12 0 0 Updated May 13, 2025
  • biscuit Public Forked from zhou-lab/biscuit

    BISulfite-seq CUI Toolkit

    huishenlab/biscuit’s past year of commit activity
    C 19 25 6 0 Updated May 13, 2025
  • compartmap Public

    Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq

    huishenlab/compartmap’s past year of commit activity
    R 14 10 11 3 Updated May 13, 2025
  • iscream Public

    Reading and manipulating WGBS data

    huishenlab/iscream’s past year of commit activity
    R 0 1 0 0 Updated Apr 25, 2025
  • STORMqc Public

    QC pipeline for STORM data

    huishenlab/STORMqc’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Apr 25, 2025
  • iscream.paper Public
    huishenlab/iscream.paper’s past year of commit activity
    R 0 0 0 0 Updated Apr 24, 2025
  • Fallopian_tube_multiomics Public

    Analysis code for <link to be inserted when published>

    huishenlab/Fallopian_tube_multiomics’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 27, 2024
  • dupsifter Public

    WGBS/WGS PCR Duplicate Marking

    huishenlab/dupsifter’s past year of commit activity
    C 5 MIT 2 0 0 Updated Nov 13, 2024
  • bsseq Public Forked from hansenlab/bsseq

    Devel repository for bsseq

    huishenlab/bsseq’s past year of commit activity
    R 0 30 0 0 Updated Jul 18, 2024
View all repositories

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