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Extract remote sensing metrics for spatial health analysis 🛰️, integrating vector-borne disease data. Easily compute areal and zonal statistics for infectious disease modeling in spatial epidemiology 🦠🏥

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land4health lifecycle: experimental

Overview

land4health is a tool developed within the HARMONIZE project to analyze frequency-grouped, weighted, and multi-source environmental indicators. The tool comprises a R package with comprehensive documentation, including usage examples and parameter selection guidelines tailored to specific case studies.

The functions that are part of the tool allow for:

  • Calculation of zonal statistics, such as mean, maximum, minimum, median, standard deviation, variance, sum, and min-max range of climate variables

  • Processing of environmental data by grouping indicators by frequency and applying weights.

  • Visualization of spatial and temporal patterns of environmental indicators.

Dependencies

rgee
R binding package that uses reticulate to wrap the Earth Engine Python API and provide R users with a familiar interface,

Installation

You can install the development version of land4health from GitHub with:

# install.packages("devtools")
devtools::install_github("harmonize-tools/land4health")

How to Start

To start using the land4health package, you can load it with library(land4health).

# Load the package
library(land4health)

When you load the package, you should see the following welcome message:

#> ── Welcome to land4health ──
#>  🌍 land4health provides tools for analyzing frequency-grouped, weighted, and multi-source environmental indicators.
#>  Currently, `land4health` supports the following features:
#>  âś” Zonal statistics calculation (e.g., MEAN, MAXIMUM, MINIMUM, MEDIAN)
#>  âś” Multi-source data integration and harmonization
#>  âś” Export and visualization of results
#>  ℹ For more information, use `?land4health` or `help(package = 'land4health')`.

Indicators

get_indicators() shows a dataframe with diverse environmental metrics. These indicators cover environmental risk, urban growth, land use change, climate variability, and air quality. Each indicator is categorized by group (e.g., multifactor, frequency, or weighted) and is measured in specific units (e.g., days, degrees Celsius, index values) with different spatial and temporal resolutions.

#> # A tibble: 6 Ă— 8
#>   Group       Indicador Description Units `Spatial resolution` `Time resolution`
#>   <chr>       <chr>     <chr>       <chr> <chr>                <chr>            
#> 1 Multifactor Environm… Stimates e… cate… Spatial grid cell s… Depending of sam…
#> 2 Multifactor Long-Ter… A total of… cate… Spatial grid cell s… Depending of sam…
#> 3 Multifactor NVDI sti… Stimates N… cate… Spatial grid cell s… Depending of sam…
#> 4 Frecuency   Rainy Da… Number of … Days  Spatial grid cell s… Monthly          
#> 5 Frecuency   Weekly T… Temperatur… Degr… Spatial grid cell s… Weekly           
#> 6 Frecuency   Land Use… Rate of ch… Perc… Spatial grid cell s… Annual           
#> # ℹ 2 more variables: Source <chr>, Link <chr>

Organization

Health Innovation Laboratory, Institute of Tropical Medicine 'Alexander von Humboldt'

Health Innovation Laboratory, Institute of Tropical Medicine “Alexander von Humboldt”
Universidad Peruana Cayetano Heredia (Lima, Peru)

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Extract remote sensing metrics for spatial health analysis 🛰️, integrating vector-borne disease data. Easily compute areal and zonal statistics for infectious disease modeling in spatial epidemiology 🦠🏥

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