Stars
Species of maritime fauna all over the world are known to travel great distances in the oceans and seas. The goal of this workflow is to be able to detect them by calculating sea distances (going a…
Massively parallel phylogenetic placement of genetic sequences
diveRsity: A comprehensive, general purpose population genetics analysis package.
An R package for identifying statistically significant clusters.
AI models trained by Google to classify species in images from motion-triggered widlife cameras.
Dark mAtteR iNvestigator: diving into the dark matter of your COI sequences
R package for interpreting paired and semi-paired environmental DNA and traditional surveys in a Bayesian framework
R package supporting interactive data access on BOLD
REference Sequence annotation and CuRatIon Pipeline
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
C++ implementation of lulu, a R package for post-clustering curation of metabarcoding data
Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options
This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated wi…
r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes
BIOSCANN: BIOdiversity Segmentation and Classification with Artificial Neural Networks
GPU-accelerated DNA barcode classification
Automatic CPU speed & power optimizer for Linux