Stars
A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets
Supporting notebooks for the ARGprofiler manuscript
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
ATLAS - Three commands to start analyzing your metagenome data
Tutorial notebooks and scripts for the mARG collection
🔺 Ternary plotting library for python with matplotlib
Python and C++ code for reading and writing genomics data.
A curated list of awesome responsible machine learning resources.
Text classification using deep learning models in Pytorch
A list of deep learning implementations in biology
Official git repository for Biopython (originally converted from CVS)
A collaboratively written review paper on deep learning, genomics, and precision medicine
CNNs for Sentence Classification in PyTorch
Skipgram Negative Sampling implemented in PyTorch
Interactive Data Visualization in the browser, from Python
Exercises and supplementary material for the deep learning course 02456 using PyTorch.
A Bokeh project developed for learning and teaching Bokeh interactive plotting!
JupyterLab computational environment.