Starred repositories
Explore 5,000+ genomes in the terminal. Light, blazing fast 🚀, vim-motion.
An advanced template repository for python projects
An intermediate template repository for python projects
A simple template repository for python projects
Pipeline for building topologically-constrained phylogenies from DNA barcode data
Codeveloping workshop for the BIF retreat
React components for biological data visualization
Mini workshop to provide a peak of what’s happening under the hood of models currently at the frontier of the AI revolution, and about how we can track the emissions of our own code.
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Updated Jul 8, 2024
kallisto | bustools workflow for pre-processing single-cell RNA-seq data
The calflops is designed to calculate FLOPs、MACs and Parameters in all various neural networks, such as Linear、 CNN、 RNN、 GCN、Transformer(Bert、LlaMA etc Large Language Model)
Geometric kernels on manifolds, meshes and graphs
lightweight python library for working with trees and sequence collections
Pipeline to fetch metadata and raw FastQ files from public databases
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
A basic template to make Pandoc-generated PDFs look better.
Statistical Rethinking course winter 2022
Python-based Informatics Kit for Analysing Chemical Units
Single-cell analysis in Python. Scales to >100M cells.
Protein hint generation pipeline for gene finding in eukaryotic genomes
Faultless AST for Open Biomedical Ontologies in Python.
A list of interesting genome browser and genome visualization programs