Stars
Low-level utilities to retrieve data from the UCSC Genome Browser
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
Foundation of external vector representation and manipulation in Bioconductor
C229 A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files)
Foundation of array-like containers in Bioconductor
High-performance sparse data representation and manipulation in R
Software infrastructure for efficient representation of full genomes and their SNPs
Representation and manipulation of short genomic alignments
Defines many S4 generic functions used in Bioconductor
S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
HTSlib high-throughput sequencing library as an R package
Foundation of vector-like and list-like containers in Bioconductor
Foundation of integer range manipulation in Bioconductor
A unified framework for working transparently with on-disk and in-memory array-like datasets
Query the gene models of a given organism/assembly
A container (S4 class) for matrix-like assays
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
Representation and manipulation of genomic intervals