Pull the image
docker pull openlink/virtuoso-opensource-7
You can find the demo data at link. The di 6DCE rectory contains all the triples and loading files to mount the Virtuoso triple-store.
Save the data into a directory like /path/to/data/dir
This directory should contain the sub-directory import containing the data and the loading files, like:
/path/to/data/dir
├── import
│ ├── vocabularies
│ │ ├── abroad.owl
│ │ ├── chebi_lite.owl
│ │ ├── cheminf.owl
│ │ ChunkNPR
│ │ │ supp-test-hits
│ │ │ ├── chunks_re.ttl.gz
│ │ │ ├── void.ttl
│ │ Chemical-activity-evidences
│ │ │ supp-test-hits
│ │ │ ├── activity_evidence.ttl.gz
│ │ │ ├── void.ttl
│ ├── load_voc.sh
│ ├── settings.sh
│ ├── upload_Resource-1_version-X1.sh
│ ├── upload_Resource-2_version-X2.sh
│ ├── ...
│ ├── update.sh
To mount the Virtuoso triple-store, please use the following bash command:
-d indicates the path to the directory containing the data downloaded before.
-c: start to mount the triple-store and clean to unmount the triple-store. After -c, when using start all loading files are presented sequentially. Note that settings.sh and load_voc.sh should be on top the list, and, update.sh at the end.
bash workflow/w_virtuoso.sh -d /path/to/data/dir/ \
-c start settings.sh load_voc.sh upload_PubMed_supp-test-hits.sh upload_LOTUS_2023-01-06.sh upload_TiabFetchedDocumentDiscusses_supp-test-hits.sh upload_TiabNPR_supp-test-hits.sh upload_ChunkNPR_supp-test-hits.sh upload_gbif-taxonomy_28-08-2023.sh upload_identification_test-hits-supp.sh upload_PubMed_only-lotus.sh upload_Chemical-activity-evidences_supp-test-hits.sh upload_Organism-activity-evidences_supp-test-hits.sh update.shTo stop the triple-store, use the following:
bash workflow/w_virtuoso.sh -d /path/to/data/dir -c clean
Before launching the web-interface (see repository: abroad-demo-webapp), check the following:
In the Virtuoso conductor panel accessible by default at http://localhost:8890/
- Go to conductor
- Log with Account:
dbaand password:abroad - Go to
Web Application Server>Virtual Domains & Directories - Select the
Default Web Siteat port8890(by default) - Go to
/sparql>Edit - Check that
Cross-Origin Resource Sharingis with "*"
Done ! The server should be now on and ready !
Go to repository: abroad-demo-webapp to see now how to launch the web-app.