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Showing results

Visualize HMMs, CMs and their comparisons

Haskell 8 Updated Jul 12, 2019

Parsing MHC nomenclature in the wild

Python 16 3 Updated Mar 24, 2025

Ankh: Optimized Protein Language Model

Python 226 18 Updated Jun 4, 2025

Peptide-MHC I binding affinity prediction

Python 208 60 Updated May 24, 2025

MHC-peptide class II interaction prediction, binding, presentation

Python 21 5 Updated Mar 16, 2022

Simplified CA and device cert manager for strongSwan VPN

Shell 65 9 Updated Jan 19, 2025

Non-parametric Entropy Estimation Toolbox

Python 407 92 Updated Oct 5, 2022

BertViz: Visualize Attention in NLP Models (BERT, GPT2, BART, etc.)

Python 7,460 829 Updated Jun 1, 2025

Excess mortality during COVID-19 pandemic

Jupyter Notebook 332 45 Updated Jan 20, 2025

A list of tools on proteomics using deep learning

97 24 Updated May 5, 2024

Medical image registration using deep learning

Python 588 81 Updated Dec 15, 2022

Hidden Markov Models Class on top of TensorFlow

Python 5 1 Updated Apr 21, 2019

Python package for Causal Discovery by learning the graphical structure of Bayesian networks. Structure Learning, Parameter Learning, Inferences, Sampling methods.

Jupyter Notebook 521 50 Updated May 22, 2025

PLAtEAU Immunopeptidome Analysis

Python 5 1 Updated Nov 27, 2020

Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.

R 13 1 Updated Feb 17, 2025

Bayesian parameter estimation of HMMs in Julia

Julia 3 Updated Aug 31, 2024

Fast Bayesian Hidden Markov Model with Wavelet Compression

C++ 17 3 Updated Jan 24, 2020

A non-parametric Bayesian approach to Hidden Markov Models

Python 87 17 Updated May 22, 2023

Parallel Implementation of HMM on Multicore Platform

C 25 6 Updated Feb 24, 2023

Programs for map handling, based on mapsoft2-libs

C++ 7 1 Updated May 22, 2025

This is a project serves as a front end for the Jlsca. It enables the user to automate the analysis part of correlation power analysis (CPA) using ChipWhisperer power traces and the Jlsca analysis …

Python 6 1 Updated Apr 24, 2019

Calculate z-scores of anthropometric measurements based on WHO and CDC child growth standards

Python 27 8 Updated Sep 5, 2023

Ledger's Advanced Side-Channel Analysis Repository

Python 394 56 Updated Sep 5, 2023

Custom Jupyter Notebook Themes

CSS 9,829 1,052 Updated Oct 18, 2023

Fast, flexible and easy to use probabilistic modelling in Python.

Python 3,452 592 Updated Mar 6, 2025
MATLAB 7 3 Updated Sep 25, 2016

An implementation of AES-256 RSM attack.

MATLAB 7 1 Updated Sep 2, 2017

Writeups for the RHME3 Challenges

Assembly 52 8 Updated Jan 7, 2019

Sequence learning toolkit for Python

Python 695 101 Updated Mar 24, 2023

Hidden Markov Models in Python, with scikit-learn like API

Python 3,192 741 Updated Oct 31, 2024
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