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xarray Public
Forked from pydata/xarrayN-D labeled arrays and datasets in Python
Python Apache License 2.0 UpdatedMay 23, 2025 -
zarr-python Public
Forked from zarr-developers/zarr-pythonAn implementation of chunked, compressed, N-dimensional arrays for Python.
Python MIT License UpdatedMay 23, 2025 -
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Parallel computing with task scheduling
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 16, 2025 -
numcodecs Public
Forked from zarr-developers/numcodecsA Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
Python MIT License UpdatedMay 14, 2025 -
zarrs Public
Forked from zarrs/zarrsA rust library for the Zarr storage format for multidimensional arrays and metadata
Rust Apache License 2.0 UpdatedMay 7, 2025 -
xvec Public
Forked from xarray-contrib/xvecVector data cubes for Xarray
Python MIT License UpdatedMay 3, 2025 -
zarr_benchmarks Public
Forked from zarrs/zarr_benchmarksPerformance benchmarks of Zarr V3 implementations
Python UpdatedApr 17, 2025 -
sklearn-ann Public
Forked from scikit-learn-contrib/sklearn-annIntegration with (approximate) nearest neighbors libraries for scikit-learn + clustering based on with kNN-graphs.
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 10, 2025 -
cuda-zarr Public
CUDA-compatible zarr stores and codecs for GPU-based I/O
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benchmarking_shapes Public
A repo for investingating different on-disk shapes implementations for `SpatialData`
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finch-tensor-python Public
Forked from finch-tensor/finch-tensor-pythonSparse and Structured Tensor Programming in Python
Python MIT License UpdatedFeb 3, 2025 -
scipy Public
Forked from scipy/scipySciPy library main repository
Python BSD 3-Clause "New" or "Revised" License UpdatedFeb 3, 2025 -
arrayloader-benchmarks Public
Forked from laminlabs/arrayloader-benchmarksPython UpdatedSep 27, 2024 -
zarrs_tools Public
Forked from zarrs/zarrs_toolsVarious tools for creating and manipulating Zarr v3 data with the zarrs rust crate
Rust Apache License 2.0 UpdatedSep 23, 2024 -
anndata-tutorials Public
Forked from scverse/anndata-tutorialsUse cases for anndata.
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedSep 18, 2024 -
mudata Public
Forked from scverse/mudataMultimodal Data (.h5mu) implementation for Python
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 29, 2024 -
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towncrier Public
Forked from twisted/towncrierManage the release notes for your project.
Python MIT License UpdatedAug 19, 2024 -
scanpy-tutorials Public
Forked from scverse/scanpy-tutorialsScanpy Tutorials.
Jupyter Notebook UpdatedFeb 26, 2024 -
scanpy Public
Forked from scverse/scanpySingle-cell analysis in Python. Scales to >1M cells.
Python BSD 3-Clause "New" or "Revised" License UpdatedFeb 20, 2024 -
anndata Public
Forked from scverse/anndataAnnotated data.
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 10, 2024 -
example-sphinx-basic Public
Forked from readthedocs-examples/example-sphinx-basicA basic Sphinx project for Read the Docs
Python MIT License UpdatedAug 18, 2023 -
torchquad Public
Forked from esa/torchquadNumerical integration in arbitrary dimensions on the GPU using PyTorch / TF / JAX
Python GNU General Public License v3.0 UpdatedMay 10, 2023 -
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multigrate Public
Forked from theislab/multigrateMultigrate: multiomic data integration
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 8, 2022 -
squidpy Public
Forked from scverse/squidpySpatial Single Cell Analysis in Python
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 14, 2022 -
geotiff.js Public
Forked from geotiffjs/geotiff.jsgeotiff.js is a small library to parse TIFF files for visualization or analysis. It is written in pure JavaScript, and is usable in both the browser and node.js applications.
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GLUE Public
Forked from gao-lab/GLUEGraph-linked unified embedding for single-cell multi-omics data integration
Python MIT License UpdatedJan 25, 2022 -
scvi-tools-skeleton Public template
Forked from scverse/scvi-tools-skeletonTemplate repository for creating novel models with scvi-tools
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 26, 2021
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