Stars
PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
asl / BandageNG
Forked from rrwick/Bandagea Bioinformatics Application for Navigating De novo Assembly Graphs Easily
A collection of resources on modern C++
SDK for GPU accelerated genome assembly and analysis
A fast K-mer counter for high-fidelity shotgun datasets
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
Layout module for raw de novo genome assembly of long uncorrected reads.
A tool for Racon polishing of miniasm assemblies
Peregrine: Fast Genome Assembler Using SHIMMER Index
lbcb-sci / graphmap2
Forked from isovic/graphmapGraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/7204…
Conda recipes for the bioconda channel.
This repository is deprecated, please use the link to the right.
FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
Pure-python implementation of UCSC liftOver genome coordinate conversion
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
nim wrapper for htslib for parsing genomics data files
Wrapper script for easier read scrubbing with DASCRUBBER
Resources for Automation Panda, my blog about software testing and career anecdotes
A minimap2 frontend for PacBio native data formats
Making diploid assembly becomes common practice for genomic study