Starred repositories
Code from the book "Research Methods Using R: advanced data analysis in the behavioural and biological sciences", published by Oxford University Press
Generate comic panels using a LLM + SDXL. Powered by Hugging Face 🤗
Nextflow pipeline to analyze PacBio HiFi full-length 16S data
Microbial ecological network visualization clustering
Bioinformatics Workbook repository
Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to roary_plots
A GitBook version of the R Crash Course self-tutorials: https://colauttilab.github.io/RCrashCourse
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network out…
GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Repository for Digital Earth Australia Jupyter Notebooks: tools and workflows for geospatial analysis with Open Data Cube and Xarray
July 2022 NEAIR workshop: tidyverse intro for beginners
A tool to find sequencing data and metadata from public databases.
Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
📊📄 ggplot2 theme elements reference sheet
Website for the animal traits database
A brief introduction to R as a programming language, targeting biologists
Book repository for The Turing Way: a how to guide for reproducible, ethical and collaborative data science