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Jocx

Jade's optimisers, CoalHMM, and admixture modeling

This program executes CoalHMM with a specified model and optimiser using a given sequence of data in the format of ziphmm directories. The program prints to standard output the progression of the estimated parameters and the corresponding log likelihood.

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parameterized model inference based on hidden Markov models, CoalHMM, and admixture modeling

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