Tags: janka2012/digIS
Tags
New filtering (#5) * hypothetical protein annotation fix, integrase added, refactoring * ignore strand, logic for finding unique ranges changed * refac: removed unnecessary line * method for looking for hits in full range * added argparse and modifications to run on metacentrum * positive_subject_strand_only set to False * added check if genbank record is pseudo * fixed kept attribute * added new rules to classifier * fixed bug in merge * GenBank classification based on size and type of overlapping region. * Classification: comparison of IS having lager AG than Tpase fixed * added level (TP, pNov, FP) to output csv * sequence id added to the output, refactor * export seqid to the output * updated classification to include integrase. better dealing with accessory genes. added IS subfamilies as IS-related keywords * imports cleanup * updated definitions for digIS * Update README.md Co-authored-by: Martinek Tomas <martinto@edesign1.fit.vutbr.cz>