Stars
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
Standardized data set for machine learning of protein structure
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
MMseqs2: ultra fast and sensitive search and clustering suite
Code for paper titled, "Beyond Homology Transfer: Deep Learning for Automated Annotation of Proteins". Preprint available at: http://www.biorxiv.org/content/early/2017/07/25/168120
Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler
Fast genome and metagenome distance estimation using MinHash
A pipeline for large-scale phylogeny-based protein function prediction using SIFTER (Statistical Inference of Function Through Evolutionary Relationships)
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
PacBio hybrid error correction through iterative short read consensus
A single molecule sequence assembler for genomes large and small.
Experimental pipeline for correcting nanopore reads
A parallel implementation of gzip for modern multi-processor, multi-core machines.
Efficient pythonic random access to fasta subsequences
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.
A professional front-end template for building fast, robust, and adaptable web apps or sites.
Versatile open-source tool for microbiome analysis
VWorks protocols and other files for the Agilent NGS Workstations at the Genomics facility at SciLifeLab.
💾 peer-to-peer sharing & live syncronization of files via command line
Algorithm for secondary de novo genome assembly guided by closely related references
A metagenomic and isolate assembly and analysis pipeline built with AMOS