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Stars
A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic stem and progenitor cells and differentiated populations
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
R implementation of liquidCNA, a method for tracking emergent subclone dynamics in CNA data from longitudinal (liquid) biopsies
Collections of library structure and sequence of popular single cell genomic methods
ggplot extension: options for tailored facets, multiple colourscales and miscellaneous
R function for calculating the timing of DNA aberration events from NGS data.
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
A python parser to simplify and build the VCF (Variant Call Format).
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Extract kindle highlights into organised text files
Implementation of the LCV method for quantifying gene expression variability
A collection of scripts used to recreate files and graphs used in the MMRF CoMMpass analysis.
🧬 immunarch [R package] – Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
An Interactive Consensus Clustering framework for Cross-platform data analysis
Coverage / read count calculator for sequencing experiments
Subsample a large Drosophila dataset to measure the effect of coverage depth on variant calls
basic walk-throughs for alignment and variant calling from NGS sequencing data
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.