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bioimage_quant Public
Simple image quantification software. Currently implemented for SDS-PAGE gels, western blots, and yeast spotting assays.
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pythonic-science Public
Forked from harmsm/pythonic-scienceMaterials for Scientific Programming in Python Course at the UO
Jupyter Notebook The Unlicense UpdatedApr 1, 2020 -
augur Public
Forked from nextstrain/augurPipeline components for real-time phylodynamic analysis
Python GNU Affero General Public License v3.0 UpdatedMar 31, 2020 -
enspara Public
Forked from bowman-lab/ensparaModeling molecular ensembles with scalable data structures and parallel computing
Python GNU General Public License v3.0 UpdatedFeb 19, 2020 -
pytc Public
Forked from harmslab/pytcpython program for analyzing isothermal titration calorimetry data
Python The Unlicense UpdatedJan 3, 2020 -
jharman25.github.io Public
Forked from daattali/beautiful-jekyll✨ Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
HTML Other UpdatedJan 2, 2020 -
phylogenetics Public
Forked from harmslab/phylogeneticsA Python API for managing phylogenetics projects
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phylopandas Public
Forked from Zsailer/phylopandasPandas DataFrames for phylogenetics
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 20, 2019 -
herbivory-defense-simulation Public
Forked from BeerTheorySociety/herbivory-defense-simulationA computational approach to model the evolution of herbivory defense compounds in plants.
UpdatedNov 29, 2018 -
phylovega Public
Forked from Zsailer/phylovegaVisualize phylogenetic trees in Vega from Python
Python UpdatedNov 15, 2018 -
restaurant-visitors Public
Forked from BeerTheorySociety/restaurant-visitorsSolution to the Kaggle restaurant visitor forecasting
Jupyter Notebook UpdatedSep 27, 2018 -
physical-biochemistry Public
Forked from harmsm/physical-biochemistrycourse material for physical biochemistry class taught at the University of Oregon
The Unlicense UpdatedSep 23, 2018 -
DeepLabCut Public
Forked from DeepLabCut/DeepLabCutMarkerless tracking of user-defined features with deep learning
Python GNU Lesser General Public License v3.0 UpdatedSep 20, 2018 -
mapbox-gl-js Public
Forked from mapbox/mapbox-gl-jsInteractive, thoroughly customizable maps in the browser, powered by vector tiles and WebGL
JavaScript Other UpdatedSep 6, 2018 -
guide-to-working-as-team-on-github Public
Forked from Zsailer/guide-to-working-as-team-on-githubA quick guide to working as a team on Github
UpdatedAug 30, 2018 -
ama-parser Public
Takes 96-well plate reader data, converts to pandas dataframe, and allows for analysis/plotting of bacterial growth curves
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pyasr Public
Forked from Zsailer/pyasrAncestral Sequence Reconstruction in Python
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 11, 2018 -
python-for-scientists Public
Forked from Zsailer/python-for-scientistsThe easy way to set up Python for a scientist.
UpdatedJun 28, 2018 -
reveal-presentation-template Public
Forked from harmslab/reveal-presentation-templatehtml and basic directory structure template for (relatively) easily creating reveal.js slideshows
HTML UpdatedMay 14, 2018 -
ambigauss Public
Forked from BeerTheorySociety/ambigaussGeneric multi-peak fitter in Python
Jupyter Notebook UpdatedApr 26, 2018 -
pida Public
Software for analyzing multiple protein-protein interaction docking solutions, calculating contact regions using mdtraj, and visualizing in useful ways via nglview.
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PythonDataScienceHandbook Public
Forked from jakevdp/PythonDataScienceHandbookJupyter Notebooks for the Python Data Science Handbook
Jupyter Notebook MIT License UpdatedJun 4, 2017 -
WhirlwindTourOfPython Public
Forked from jakevdp/WhirlwindTourOfPythonThe Jupyter Notebooks behind my OReilly report, "A Whirlwind Tour of Python"
Jupyter Notebook Creative Commons Zero v1.0 Universal UpdatedJun 3, 2017 -
pytc-demos Public
Forked from harmslab/pytc-demosSet of jupyter notebooks illustrating the pytc API.
Jupyter Notebook The Unlicense UpdatedMay 16, 2017 -
python_for_scientists Public
Forked from john-science/python_for_scientistsPython Open Courseware for Scientists and Engineers
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phylo_tools Public
Forked from harmsm/phylo_toolspython tools for phylogenetic inference
Python The Unlicense UpdatedSep 15, 2015
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