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Starred repositories

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Spatial Transcriptomics Capture Location Deconvolution

R 186 25 Updated May 26, 2025

R/Shiny app for Breast Cancer PDTX Encyclopaedia

R 3 1 Updated May 4, 2021

Shiny GUI application for genomics meta-analysis

R 22 12 Updated Nov 4, 2020

Short Course on Multi-Omics

HTML 14 11 Updated Apr 21, 2023

ExplaineR is an R package built for enhanced interpretation of classification and regression models based on SHAP method and interactive visualizations with unique functionalities so please feel fr…

R 17 1 Updated Jul 5, 2025

A set of tools to understand what is happening inside a Random Forest

R 235 37 Updated Mar 25, 2024

Patient Reported Outcomes Network Analysis

HTML 5 Updated Nov 17, 2024

R package BioPred

R 10 Updated Jun 7, 2024

Detect doublets in single-cell RNA-seq data

Jupyter Notebook 155 74 Updated Dec 29, 2020

An AI-powered research assistant that performs iterative, deep research on any topic by combining search engines, web scraping, and large language models. The goal of this repo is to provide the si…

TypeScript 16,980 1,761 Updated Jun 7, 2025

A live stream development of RL tunning for LLM agents

Python 3,159 444 Updated Jul 4, 2025

A pipeline especially built for computing several single-cell datasets

HTML 7 3 Updated Feb 8, 2023

No fortress, purely open ground. OpenManus is Coming.

Python 47,846 8,363 Updated Jun 30, 2025

Use Siliconflow api for AI chatbot in R

R 2 Updated Feb 18, 2025

🦉 OWL: Optimized Workforce Learning for General Multi-Agent Assistance in Real-World Task Automation

Python 17,426 2,035 Updated Jul 4, 2025

A pipeline especially built for computing several single-cell datasets

HTML 1 Updated Feb 8, 2023

Heatmaps from Tidy Data

R 67 6 Updated Jan 8, 2025

Tools for ggplot2 scales

R 436 114 Updated Apr 24, 2025

Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

HTML 379 85 Updated May 13, 2025

Approaching (Almost) Any Machine Learning Problem

8,007 1,116 Updated Mar 25, 2023

## AI医院: Multi-Agent 医学智能体 与患者进行多轮对话,提出相关和探索性的问题,推荐适当的医学检查,并在收集足够的信息后做出诊断。设置检查员,他们专门负责与患者互动并提供相关的医学检查结果,确保医生能够获得患者必要的客观信息以做出准确诊断。此外,主治医生负责在整个会话后评估医生的表现。 模拟患者与多名医生之间的互动,包括体检结果的收集和最终诊断。

Python 29 7 Updated Sep 26, 2024

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network

Jupyter Notebook 25 Updated Sep 6, 2024

R code used to perform the analyses described in the paper "Prelude to Malignancy: A Gene Expression Signature in Normal Mammary Gland from Breast Cancer Patients Suggests Pre-tumorous Alterations …

1 Updated Sep 20, 2023

Simplify ggplot2 visualisation

R 188 9 Updated Jul 11, 2025

A Toolbox for Spatial Transcriptomics Analysis

R 153 21 Updated May 6, 2025

Multimodality Fusion Subtyping (Nature Communications)

R 22 2 Updated Apr 21, 2025

Temporal Cell-Cell Interaction Analysis in Single-Cell RNA-seq Data

R 5 Updated Nov 27, 2024

Python资源大全中文版,包括:Web框架、网络爬虫、模板引擎、数据库、数据可视化、图片处理等,由「开源前哨」和「Python开发者」微信公号团队维护更新。

Makefile 29,602 7,974 Updated Aug 29, 2022

Word power made easy 词汇笔记和在线思维导图

Python 314 148 Updated Mar 20, 2022
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