Stars
A DSL for data-driven computational pipelines
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions
Training materials for a Nextflow beginners workshop 2024
minimal example implementations for bioinformatics workflow managers
Machine Learning From Scratch. Bare bones NumPy implementations of machine learning models and algorithms with a focus on accessibility. Aims to cover everything from linear regression to deep lear…
GATK RNA-Seq Variant Calling in Nextflow
Variant Calling Pipeline Using GATK4 and Nextflow