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UCSC command line bioinformatic utilities

C 183 94 Updated Jul 31, 2024

Transformers 3rd Edition

Jupyter Notebook 427 161 Updated May 6, 2025

Personal Cancer Genome Reporter (PCGR)

R 266 48 Updated Jul 11, 2025

FASTQ compression

C 128 23 Updated Aug 15, 2023

This repository contains data indexes from NIST's Genome in a Bottle project.

Roff 250 71 Updated Nov 30, 2023

tools for working with genome variation graphs

C++ 1,217 209 Updated Jul 11, 2025

Genomics Workflows on AWS

Shell 147 111 Updated Jul 31, 2023

Docker container for Illumina bcl2fastq

C 10 15 Updated Aug 7, 2024

awesome-bio-datasets

233 46 Updated Oct 28, 2017

Webin XML and JSON API.

Java 13 10 Updated Jul 8, 2025

A Kubernetes controller for Elastic Load Balancers

Go 4,106 1,535 Updated Jul 10, 2025

A program for summarising CpG methylation patterns

Python 20 5 Updated Sep 9, 2016

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

242 58 Updated Nov 28, 2022

🍯 T-Pot - The All In One Multi Honeypot Platform 🐝

C 8,059 1,236 Updated Jul 5, 2025

Javascript library for browser to S3 multipart resumable uploads

JavaScript 1,828 205 Updated Jan 12, 2024

Modern Honey Network

Python 2,459 629 Updated Nov 30, 2024

πŸš€ A fast and lightweight utility and Python library for downloading posts, stories, and highlights from Instagram.

Python 171 15 Updated Oct 12, 2024

Example Nextflow pipelines and programming techniques

Nextflow 107 26 Updated May 12, 2025

This repository contains code and configuration samples (e.g. .ebextensions) for AWS Elastic Beanstalk.

Python 1,234 884 Updated Jun 3, 2025

Example application code for the python architecture book

Python 2,377 1,038 Updated Jun 10, 2025

πŸ”₯ A highly scalable, offline-first foundation with the best developer experience and a focus on performance and best practices.

JavaScript 29,534 6,098 Updated Mar 23, 2023

Simple, powerful online communities.

JavaScript 10,869 1,226 Updated Jul 20, 2022

A serverless app that sets up an AWS CodePipeline pipeline for a given GitHub repo. This app allows people developing SAM applications to quickly get CodePipeline-based CD setup for their project.

88 62 Updated Jul 26, 2024

Indico - A feature-rich event management system, made @ CERN, the place where the Web was born.

Python 1,912 478 Updated Jul 11, 2025

A curated list of awesome Flask resources and plugins

12,530 1,593 Updated Aug 18, 2024

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Go 1,436 169 Updated Apr 25, 2025

A curated list of awesome Amazon Web Services (AWS) libraries, open source repos, guides, blogs, and other resources. Featuring the Fiery Meter of AWSome.

Python 13,564 1,815 Updated Mar 12, 2024

ENCODE ATAC-seq pipeline

Python 424 176 Updated Jul 18, 2024

A DSL for data-driven computational pipelines

Groovy 2,985 705 Updated Jul 11, 2025
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