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Source files for the Raspberry Pi Pinout documentation website.
PRED-LD: A tool for GWAS summary statistics Imputation, using precalculated LD statistics
harmonization, liftover, and imputation of summary statistics from GWAS
A Dockerized python Script to fetch Garmin health data and populate that in a InfluxDB Database, for visualization long term health trends with Grafana
A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
Tools for fast and flexible genome assembly scaffolding and improvement
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
quincunx: an R package to query, download and wrangle PGS Catalog data
CytoGenetic Pattern Sleuth (CytoGPS) is a software tool to parse semi-structured ISCN-based karyotypes in text formats. This Java-based software was developed using ANTLR (ANother Tool for Language…
Credible set determination in GWAS results
Fast API server for calculating linkage disequilibrium
VACmap: a long-read aligner specifically designed for complex structural variation discovery
Joint structural variant and copy number variant caller for HiFi sequencing data
A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.
RNA-seq prediction with deep convolutional neural networks.
RSparsePro for robust fine-mapping in the presence of LD mismatch
Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]