8000 joeflack4 (Joe Flack) / Starred · GitHub
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Hacking for the good of humanity, or trying
💦
Hacking for the good of humanity, or trying

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@TB-Modeling @jhu-bids

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Starred repositories

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TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design

Jupyter Notebook 197 43 Updated May 6, 2024

A FHIR implementation guide build and publish template

HTML 1 Updated Jan 2, 2019

LLM-driven curation assist tool

Jupyter Notebook 86 13 Updated May 5, 2025

CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks

Python 35 11 Updated May 12, 2025

Tool for mapping drugs in a source vocabulary to RxNorm(Extension) concepts in the OMOP-CDM

Java 3 1 Updated Mar 28, 2024

Bayesian OWL ontology merging

Scala 29 2 Updated Aug 5, 2024

Ontology Access Kit: A python library and command line application for working with ontologies

Python 140 30 Updated Apr 10, 2025

Simple Standard for Sharing Ontology Mappings

Python 164 25 Updated May 13, 2025

Ontology for the description of human clinical 8000 features

Makefile 308 53 Updated May 6, 2025

ROBOT is an OBO Tool

Java 273 75 Updated May 10, 2025

Mondo Disease Ontology

Jupyter Notebook 251 57 Updated May 13, 2025

Web app and CLI tools for working with biomedical terminologies. https://github.com/orgs/jhu-bids/projects/9/views/7

Python 11 10 Updated May 6, 2025

🦜🔗 Build context-aware reasoning applications

Jupyter Notebook 107,395 17,455 Updated May 14, 2025

🤖 Assemble, configure, and deploy autonomous AI Agents in your browser.

TypeScript 34,054 9,413 Updated Apr 29, 2025

DROID Reminds us that Ordinary Individuals can be Developers

Clojure 4 1 Updated Jun 21, 2023

OpenAssistant is a chat-based assistant that understands tasks, can interact with third-party systems, and retrieve information dynamically to do so.

Python 37,345 3,267 Updated Aug 17, 2024

JARVIS, a system to connect LLMs with ML community. Paper: https://arxiv.org/pdf/2303.17580.pdf

Python 24,137 2,019 Updated Sep 26, 2024

AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.

Python 175,288 45,712 Updated May 14, 2025

LLM-based ontological extraction tools, including SPIRES

Jupyter Notebook 680 92 Updated May 7, 2025

Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats

Python 44 6 Updated May 1, 2025

Automated assistance for the schema development lifecycle

Python 46 16 Updated May 13, 2025

Linked Open Data Modeling Language

Python 371 120 Updated May 13, 2025

A Cookiecutter template for BBOP work

Python 2 Updated Mar 31, 2023

Transforms OWL ontologies into FHIR code systems.

Java 21 13 Updated Apr 3, 2023

Robust Speech Recognition via Large-Scale Weak Supervision

Python 81,658 9,815 Updated May 13, 2025

Build and publish crates with pyo3, cffi and uniffi bindings as well as rust binaries as python packages

Rust 4,539 319 Updated May 13, 2025

Jinja2 Command-Line Tool, reworked

Python 746 82 Updated Jun 24, 2024

A collection of example projects to get you up to speed with HL7 FHIR

Java 1 Updated Dec 26, 2023

Code for an animated Neopixel belt, run by a DFRobot BLE Beetle controller

C++ 2 Updated Mar 20, 2019

Fast, flexible tools to simplify scientific Python

Python 37 13 Updated May 3, 2025
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