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🤖🌊 aiFlows: The building blocks of your collaborative AI

Jupyter Notebook 258 11 Updated Apr 30, 2024

This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used RNA-seq pipelines"

28 11 Updated Jan 16, 2024

My contributions to the #TidyTuesday challenge, a weekly data visualization challenge. All plots are 💯 created in R with ggplot2.

R 808 142 Updated Sep 26, 2023

General Assembly's Data Science course in Washington, DC

Roff 666 376 Updated May 19, 2020

Run STAR on single-cell sequencing data and add statistical modeling to increase sensitivity and precision in calling splice junctions.

Python 1 1 Updated Jul 16, 2021

Easily generate information-rich, publication-quality tables from R

R 2,097 216 Updated Jun 9, 2025

Data quality assessment and metadata reporting for data frames and database tables

R 961 58 Updated Jun 12, 2025

Repository for the cheatsheet and R code for generating the examples displayed.

R 182 45 Updated Aug 26, 2018

my .bashrc and related files

R 16 2 Updated Aug 9, 2024

Course materials for Kieran Healy's rstudio::conf 2020 data visualization workshop

85 60 Updated Feb 20, 2020

Tools for processing UMI RNA-tag data

Python 129 33 Updated Mar 15, 2023

source code for FusionFilter

Perl 9 5 Updated Nov 27, 2024

RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows

Jupyter Notebook 17 4 Updated Mar 7, 2022

Tools to deal with dependencies in scripts, Rmd and packages

R 109 13 Updated Jun 13, 2025
Jupyter Notebook 2 Updated Aug 14, 2019

⚠️ ARCHIVED ⚠️ Isolate essential code to re-produce specific results.

TeX 94 13 Updated Dec 6, 2022

An R pacakge for creating and practicing digital flashcards

R 7 Updated Apr 20, 2020

Student Solutions to An Introduction to Statistical Learning with Applications in R

207 137 Updated Apr 6, 2021

Docs and implementation of the reMarkable file sync API

PHP 401 26 Updated Apr 24, 2023

Statistical Rethinking course at MPI-EVA from Dec 2018 through Feb 2019

2,021 392 Updated May 24, 2020

Renku provides a platform and tools for reproducible and collaborative data analysis.

Scala 242 33 Updated Jun 15, 2025
Perl 5 4 Updated Aug 30, 2024

Speaker slides and materials for SatRday Chicago 2019

13 5 Updated May 9, 2019

An RNA-Seq based fusion simulator

Python 3 Updated May 9, 2019

a software tool for simulating fusion transcripts

Java 9 3 Updated Mar 10, 2016

Wrapper to a number of SNP web APIs

R 54 22 Updated Nov 24, 2023

New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community

R 52 20 Updated Jun 11, 2025

R client for the Google Translation API, Google Cloud Natural Language API and Google Cloud Speech API

HTML 198 41 Updated Jul 17, 2024

Slides for my talk at RUG Barcelona 2017-06-13 ✨ 📦

HTML 12 2 Updated Jun 13, 2017
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