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Represent trained machine learning models as Pyomo optimization formulations

Python 324 65 Updated Apr 4, 2025

Gaussian process modelling in Python

Python 223 19 Updated Dec 15, 2024

LOOS: a lightweight object-oriented structure analysis library

C++ 125 25 Updated Apr 8, 2025

WESTPA: The Weighted Ensemble Simulation Toolkit with Parallelization and Analysis

Python 203 58 Updated Jul 1, 2025

Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation

Python 811 87 Updated Apr 11, 2025
Python 10 1 Updated Sep 16, 2020
Jupyter Notebook 14 4 Updated May 13, 2020

Gaussian-Mixture-Based Enhanced Sampling

Jupyter Notebook 3 1 Updated Jul 1, 2023

Implementation of the EMUS algorithm for recombining multiple biased data sources in python

HTML 14 2 Updated Mar 9, 2024

Code for the multivariate Generalised von Mises

MATLAB 2 1 Updated Sep 20, 2016

Fast, parallelized implementation of Principal Component Analysis with constant memory consumption for large data sets.

C 10 2 Updated Feb 18, 2022

this software is not supported anymore. please visit https://github.com/moldyn/FastPCA for the current version.

C 12 4 Updated Aug 22, 2017
Rich Text Format 3 2 Updated Dec 8, 2019

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

Python 6,098 1,886 Updated Jul 14, 2025

Libertinus font family

Python 1 Updated Sep 17, 2024

The Free Energy and Advanced Sampling Simulation Toolkit (FEASST) is a free and open-source software to conduct molecular- and particle-based simulations with Monte Carlo methods.

HTML 41 17 Updated Jul 9, 2025

Notebooks and code for the book "Introduction to Machine Learning with Python"

Jupyter Notebook 7,774 4,645 Updated Mar 14, 2024

Chemical library developed using OpenModelica for steady-state and dynamic process simulation

Modelica 40 27 Updated Jun 20, 2024

Thermophysical properties for the masses

C++ 890 324 Updated Jul 4, 2025
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