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Massachusetts Institute of Technology
- jrcasey.github.io
- @OnticOpen
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kickstart.nvim Public
Forked from nvim-lua/kickstart.nvimA launch point for your personal nvim configuration
Lua MIT License UpdatedAug 31, 2024 -
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Bioremdiation Public
Collection for Bioremediation LDRD-LW proposal
MIT License UpdatedJan 20, 2024 -
evolutionABM Public
Agent Based Modeling of mutation with community dFBA
MIT License UpdatedJan 17, 2024 -
PanGEM Public
Pangenome-scale metabolic network reconstruction, analysis, and strain-model extraction
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mse Public
Microbial Simulation Environment - A toolbox for the simulation of genome-scale metabolic network reconstructions in the marine environment. A case study with the AMT-13 cruise transect is included
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mse_EqPac Public
MSE toolbox applied to a 1992 EqPac transect of the equatorial Pacific along the 140W line.
MATLAB MIT License UpdatedMay 27, 2021 -
mse_AMT Public
Microbial Simulation Environment - A toolbox for the simulation of genome-scale metabolic network reconstructions in the marine environment. A case study with the AMT-13 cruise transect is included.
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NutrientUptake Public
Accompanying code to Casey and Follows, 2020. A flexible and easy-to-use model of microbial acclimation to nutrient availability.
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bayesian_cbiomes Public
Forked from CBIOMES/bayesian_cbiomesnotebooks and files for the Bayesian CBIOMES workshop
Jupyter Notebook UpdatedJan 10, 2020