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  • My website

    JavaScript MIT License Updated Oct 22, 2024
  • A launch point for your personal nvim configuration

    Lua MIT License Updated Aug 31, 2024
  • PheArrMe Public

    Phenotype array guided GEM gap-filling

    Python 1 1 MIT License Updated May 2, 2024
  • Collection for Bioremediation LDRD-LW proposal

    MIT License Updated Jan 20, 2024
  • Agent Based Modeling of mutation with community dFBA

    MIT License Updated Jan 17, 2024
  • PanGEM Public

    Pangenome-scale metabolic network reconstruction, analysis, and strain-model extraction

    MATLAB 8 3 MIT License Updated Feb 18, 2023
  • mse Public

    Microbial Simulation Environment - A toolbox for the simulation of genome-scale metabolic network reconstructions in the marine environment. A case study with the AMT-13 cruise transect is included

    MATLAB 2 MIT License Updated Sep 14, 2022
  • mse_EqPac Public

    MSE toolbox applied to a 1992 EqPac transect of the equatorial Pacific along the 140W line.

    MATLAB MIT License Updated May 27, 2021
  • mse_AMT Public

    Microbial Simulation Environment - A toolbox for the simulation of genome-scale metabolic network reconstructions in the marine environment. A case study with the AMT-13 cruise transect is included.

    MATLAB 3 1 Updated Feb 23, 2021
  • MSE adapted for AMT cruise

    MATLAB 1 Updated Sep 16, 2020
  • Accompanying code to Casey and Follows, 2020. A flexible and easy-to-use model of microbial acclimation to nutrient availability.

    MATLAB 3 MIT License Updated Jul 10, 2020
  • OldSite Public

    Homepage

    Ruby Creative Commons Zero v1.0 Universal Updated Jul 7, 2020
  • notebooks and files for the Bayesian CBIOMES workshop

    Jupyter Notebook Updated Jan 10, 2020
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