Stars
Simple, fast-loading, n-dimensional array viewer with minimal dependencies.
ilastik-shell, applets, and workflows to string them together.
Create movies from series of key-frames in napari.
Read xarray.DataArrays from multiscale datasets with various metadata standards
Incorporating Machine learning tools into Image Analysis workflows using Fiji, Ilastik and StarDist
Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
Implementations of SIMD instruction sets for systems which don't natively support them.
A translator from Intel SSE intrinsics to Arm/Aarch64 NEON implementation
Venus method files in the “.pkg” format for the Semi Automated Passaging, Seeding and Maintenance, of the Allen cell collection of hiPSC lines expressing green fluorescent protein tagged to protein…
Specification for the bioimage.io model description file.
SQL syntax highlighting for tree-sitter
A command-line utility to plot the dependency graph of a Conda environment.
Distributed segmentation for bio-image-analysis
Seamless operability between C++11 and Python
3D U-Net model for volumetric semantic segmentation written in pytorch
napari: a fast, interactive, multi-dimensional image viewer for python
C++ Requests: Curl for People, a spiritual port of Python Requests.
A cookiecutter template for a modern C++ project with python bindings
WebGL-based viewer for volumetric data
The C++ Core Guidelines are a set of tried-and-true guidelines, rules, and best practices about coding in C++
Read and write Neuroglancer datasets programmatically.
Old academic project for my PhD - no longer maintained by me: fast gaussian and derivative convolutional filters