neurotic

Project to infer 3D structure from Open Connectome data

Requirements:

Files:

latex/ -- see submission.tex.
src/ -- code for this project. cd to this directory and run startup to prepare the environment. In particular,
- experiment/ -- main functions; entry point for running code
- neal3_iter.m, neal8_iter.m -- Implementations of MCMC sampling based on Radford Neal's papers (details in comments)
- MDP.m, MDPLight.m, NormalWishart.m, GammaGamma.m, etc. -- Class implementations of conjugate distributions supporting online inference.
- GraphDist.m, GraphDistDistribution.m -- Support for Geodesic distances (details in paper)
src/scrape - scripts (mostly curl) to download data from openconnecto.me and compatible servers. Some scripts placeholders for secret keys. Please email the repository collaborators for details.
ddpcode/ - Dependence Dirichlet Process tracking module due to Willie Neiswanger.
data/ - Code expects data to live here. Scraping code puts it here.

Name		Name	Last commit message	Last commit date
Latest commit History 71 Commits
data		data
ddpcode		ddpcode
fig		fig
latex		latex
log		log
misc		misc
src		src
test		test
.gitignore		.gitignore
README.md		README.md

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