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TrackMate extension for oneat for verifying lineage trees
DEPRECATED: collections of plugins for the napari hub
This repository contains notebooks and code examples for the course Implementing Artificial Neural Networks with Tensorflow @UOS 2022/23
📓 eLabFTW is the most popular open source electronic lab notebook for research labs.
Coursework material for introduction to NLP
A utility to be able to launch jobs on JZ with reasonable defaults
The python-microscopy environment - an open-source package for light microscopy
A plugin to visualise 3D spatial single cell omics
An Open Source Machine Learning Framework for Everyone
Cookiecutter for napari plugins
StarDist - Object Detection with Star-convex Shapes
Regions of interest (ROIs) and labelings for ImgLib2
Samples for CUDA Developers which demonstrates features in CUDA Toolkit
Accelerated Pixel and Object Classifiers (APOC)
FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Available via pip package vollseg.
Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.
A minimalistic napari plugin to create and save regions of interest and annotations on series of images