8000 kdm9 (Dr. K. D. Murray) / Starred · GitHub
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Offline till March 2025; Remind me if I don't respond
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Offline till March 2025; Remind me if I don't respond

Organizations

@borevitzlab @biocore @BioJulia @biospectrabysequencing @COMBINE-Canberra @bioconda @IWYP60 @plantimmunity

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OpenSCAD 2 1 Updated May 19, 2025

Shine MP3 encoder for ESP32

C 24 3 Updated Dec 9, 2019

A collection of various audio encoder ports for the ESP32 LyraT board, including FLAC, MP3, and OPUS.

2 Updated May 21, 2022

Bare metal SDIO driver for STM32F405

C 1 Updated Dec 3, 2024

STM32 stuff

C 1,027 499 Updated Jan 31, 2022

STM32 library for working with OLEDs based on SSD1306, SH1106, SH1107 and SSD1309, supports I2C and SPI

C 882 234 Updated Feb 9, 2025

A drop-in replacement for argparse that allows options to also be set via config files and/or environment variables.

Python 744 121 Updated May 4, 2025

Pangenome-Informed Genome Assembly (PIGA) workflow for population-scale diploid genome assembly

Python 4 Updated Mar 20, 2025

Bioinformatics program inStrain

Python 168 36 Updated May 9, 2025

Open source alternative to Google Meet and Zoom powered by LiveKit: HD video calls, screen sharing, and chat features. Built with Django and React.

TypeScript 637 45 Updated May 21, 2025

A collaborative note taking, wiki and documentation platform that scales. Built with Django and React. Opensource alternative to Notion or Outline.

Python 12,141 294 Updated May 21, 2025

An experimental Snakemake remote executor plugin that only requires ssh

Python 1 Updated Mar 26, 2025

quickly filter fastq files by matching sequences to a set of regex patterns

Rust 52 Updated May 17, 2025

Create videos of scrolling mel spectrograms from audio.

Python 3 Updated Sep 19, 2024

Various OpenScad project related to field recording

OpenSCAD 2 Updated Sep 16, 2024

Prodigal Gene Prediction Software

C 488 86 Updated Jan 23, 2024

Wrapper of some vim/neovim's :terminal functions.

Vim Script 1,328 116 Updated Mar 9, 2023

Genome Association Predict Integrate Tools

R 202 65 Updated May 21, 2025

experimental storage backend

Python 16 5 Updated May 15, 2025

Implements sorting algorithm for directed acyclic as well as cyclic graphs. The directed cyclic graphs are sorted by determining the minimal amount of cyclic edges and optionally then also determin…

Python 40 5 Updated Oct 16, 2023

PanTax: Strain-level metagenomic profiling using pangenome graphs

Python 34 2 Updated May 9, 2025

expressions on VCFs

Rust 85 3 Updated Apr 19, 2025

Bring a functional programming mindset to R Markdown document generation

R 28 1 Updated Jun 19, 2021

Docmost is an open-source collaborative wiki and documentation software. It is an open-source alternative to Confluence and Notion.

TypeScript 15,407 763 Updated May 21, 2025
Svelte 170 12 Updated Oct 7, 2024

OpenSCAD script to generate inserts for IKEA Samla boxes

OpenSCAD 72 12 Updated Apr 7, 2025

Long-read haplotyping of small sequences with SNP-encoded de Bruijn graphs

Rust 3 Updated Sep 30, 2024

A command-line tool and Rust library with Python bindings for generating regular expressions from user-provided test cases

Rust 7,478 174 Updated Feb 25, 2025

An easy-to-use and fast library for task-based parallelism, utilizing coroutines.

C++ 323 8 Updated Sep 13, 2024
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