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A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution

Python 12 3 Updated Jun 7, 2025

Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing

Shell 28 13 Updated Dec 13, 2024

Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.

Jupyter Notebook 15 2 Updated Jun 10, 2025

Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.

Python 85 4 Updated Jun 14, 2025
Python 13 3 Updated Jun 3, 2025

This repository hosts a minimal version of a Python API for BPNet.

Python 47 17 Updated Jul 12, 2025
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