amp-rnaseq

Code for reprocessing the RNAseq data from AMP-AD.

Name		Name	Last commit message	Last commit date
Latest commit History 18 Commits
LICENSE		LICENSE
README.md		README.md
calcSailfishVar.R		calcSailfishVar.R
check_fastq_name_match.py		check_fastq_name_match.py
check_md5_byREST.py		check_md5_byREST.py
checking_combine.R		checking_combine.R
collect_metrics_json.py		collect_metrics_json.py
combine_htseq_assay-level.R		combine_htseq_assay-level.R
combine_quant.R		combine_quant.R
count_unpaired_reads.sh		count_unpaired_reads.sh
get_md5.py		get_md5.py
run_collect_metrics.sh		run_collect_metrics.sh
run_convertbootstraps.sh		run_convertbootstraps.sh
run_get_md5s.sh		run_get_md5s.sh
run_sailfish.sh		run_sailfish.sh
run_sailfish_rosmap.sh		run_sailfish_rosmap.sh
run_star_mayo.sh		run_star_mayo.sh
run_star_rosmap.sh		run_star_rosmap.sh
run_star_sinai.sh		run_star_sinai.sh
submit_count_jobs.sh		submit_count_jobs.sh
submit_rosmap_jobs.sh		submit_rosmap_jobs.sh

Provide feedback