8000 luispedro (Luis Pedro Coelho) / Starred · GitHub
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Starred repositories

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resources for bioinformatics education

84 11 Updated May 14, 2025

Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop

C++ 3 1 Updated Jun 27, 2025

📝 Today I Learned

Vim Script 13,832 761 Updated Jul 2, 2025

Toolkit for graph-relational data across space and time

Python 114 2 Updated Sep 3, 2024

Application and Python module for average nucleotide identity analyses of microbes.

Python 215 57 Updated Jul 1, 2025

Inkscape Layer Export

Python 32 13 Updated Jul 2, 2024

Predict AMPs in (meta)genomes and peptides

Python 79 13 Updated Jun 19, 2025

🗜 💻 A crash course on Data Compression.

C++ 309 23 Updated Mar 31, 2025

SemiBin: metagenomics binning with self-supervised deep learning

Python 134 12 Updated Mar 21, 2025

A flexible developer tool that runs processes and responds to filesystem changes

Go 2,877 130 Updated May 23, 2025

resources for faculty

218 28 Updated Jan 8, 2023

This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.

62 7 Updated Apr 17, 2025

Go app that allows you to access your reMarkable tablet files through the Cloud API

Go 995 113 Updated Dec 23, 2023

Scientific Inkscape: Inkscape extensions for figure resizing and editing

Python 656 23 Updated Jun 10, 2025
C++ 1 Updated Oct 12, 2017

Parses your My Clippings.txt file, splitting them by book, removing duplicates, and outputting them in usable formats.

C# 7 Updated Dec 8, 2022

A Haskell library making it easier to write Alex lexers.

Haskell 12 5 Updated Oct 28, 2024

a framework for training sequence-level deep learning networks

Jupyter Notebook 383 92 Updated Dec 16, 2024

NGLess: NGS with less work

Haskell 148 25 Updated Mar 19, 2025

A Fast and Safe Python based on PyPy

Python 371 27 Updated Aug 6, 2023

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

Python 376 81 Updated Jun 10, 2025
C 6 Updated Sep 30, 2021

Text outlining and task management for Vim based on Emacs' Org-Mode

Python 3,156 268 Updated Dec 29, 2023

Efficient Haskell Arrays featuring Parallel computation

Haskell 390 25 Updated Jun 18, 2025

Set up a personal VPN in the cloud

Jinja 29,513 2,348 Updated Aug 30, 2024

An analysis and visualization platform for 'omics data

Python 476 149 Updated Jul 4, 2025

You say 'stack ghci', I say 'stack notebook'...

Jupyter Notebook 9 Updated Oct 30, 2017

The opposite of argparse

Python 6 Updated Oct 22, 2023

Diskbased (persistent) hashtable

C 162 28 Updated Oct 1, 2024
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