8000 Šikić lab · GitHub
[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content
@lbcb-sci

Šikić lab

A computational group with a focus on the development of new algorithms and AI models for the analysis of DNA and RNA sequencing data and biomolecular strucures

Popular repositories Loading

  1. racon racon Public

    Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

    C++ 221 34

  2. raven raven Public

    De novo genome assembler for long uncorrected reads

    C++ 219 20

  3. herro herro Public

    HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

    Rust 212 14

  4. RiNALMo RiNALMo Public

    RiboNucleic Acid (RNA) Language Model

    Python 100 18

  5. graphmap2 graphmap2 Public

    Forked from isovic/graphmap

    GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/7204…

    C++ 67 6

  6. GNNome GNNome Public

    A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.

    Python 45 5

Repositories

Showing 10 of 27 repositories
  • RiNALMo Public

    RiboNucleic Acid (RNA) Language Model

    lbcb-sci/RiNALMo’s past year of commit activity
    Python 100 Apache-2.0 18 3 0 Updated May 16, 2025
  • herro Public

    HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

    lbcb-sci/herro’s past year of commit activity
    Rust 212 14 39 7 Updated May 16, 2025
  • MADRe Public

    Strain-level metagenomic classification with Metagenome Assembly driven Database Reduction approach

    lbcb-sci/MADRe’s past year of commit activity
    Python 4 0 0 0 Updated May 12, 2025
  • Campolina Public
    lbcb-sci/Campolina’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Apr 16, 2025
  • I002C Public

    Telomere-to-Telomere diploid Indian Genome

    lbcb-sci/I002C’s past year of commit activity
    7 0 0 0 Updated Mar 28, 2025
  • metaxa Public
    lbcb-sci/metaxa’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Mar 25, 2025
  • BadRead-Meta-Fork Public

    BeadRead fork for metagenomics classification

    lbcb-sci/BadRead-Meta-Fork’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Mar 20, 2025
  • GNNome Public

    A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.

    lbcb-sci/GNNome’s past year of commit activity
    Python 45 BSD-3-Clause 5 2 0 Updated Mar 11, 2025
  • rockfish Public
    lbcb-sci/rockfish’s past year of commit activity
    Python 10 MIT 3 5 0 Updated Nov 18, 2024
  • racon Public

    Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

    lbcb-sci/racon’s past year of commit activity
    C++ 221 MIT 34 23 4 Updated Dec 29, 2023
View all repositories

Top languages

Loading…

Most used topics

Loading…
0