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sparrow Public
Take command of your set enrichment analyses.
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sparrow.shiny Public
Provides shiny components to visualize sparrow GSEA results
R Other UpdatedMay 25, 2025 -
leafcutter Public
Forked from davidaknowles/leafcutterAnnotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
R Apache License 2.0 UpdatedJun 1, 2024 -
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fishpond Public
Forked from thelovelab/fishpondFishpond: differential transcript and gene expression with inferential replicates
R UpdatedSep 2, 2021 -
universe Public
Configuration for https://lianos.r-universe.dev/
Apache License 2.0 UpdatedMay 25, 2021 -
msigdbr Public
Forked from igordot/msigdbrMSigDB gene sets for multiple organisms in a tidy data format
R Other UpdatedMar 31, 2021 -
multiGSEA Public
NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept here for posterity.
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multiGSEA.shiny Public
Provides shiny components to visualize multilGSEA results
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msigdb.data Public
Provides versioned MSigDB collections with ability to ortholog map to other species.
R Other UpdatedJun 15, 2020 -
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GenomicCache Public
Extensions to Bioconductor GenomicFeatures package. Primarily, this implements a more "Gene Centric" view on the world, as opposed to base GenomicFeature's transcript/exon/cds centric view.
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Deprecated by GeneSetDb.MSigDB. This repository is only to be used with multiGSEA@prebioc.
R UpdatedAug 31, 2018 -
Deprecated by GeneSetDb.MSigDB. This repository is only to be used with multiGSEA@prebioc.
R UpdatedAug 31, 2018 -
SeqGL Public
Forked from ManuSetty/SeqGLSeqGL is a group lasso based algorithm to extract TF sequence signals from ChIP, DNase and ATAC-seq profiles
R UpdatedNov 11, 2016 -
DT Public
Forked from rstudio/DTR Interface to the jQuery Plug-in DataTables
R Other UpdatedSep 22, 2015 -
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buckshot Public
An R interface to "shotgun", a parallel lasso and sparse logistic regression solver written in C++
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ARE.utils Public
A conglomeration of utilities that aren't project specific and use in my R day-to-day
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TagSeq-original Public
Analysis of tag based high-throughput sequencing protocols
R UpdatedMay 8, 2013 -
papers-bin Public
Run commands against your Papers2 database from the command line
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Rx Public
Eases some of the pain when using Sublime Text 2 to code in R
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moin-mule Public
Utility that enables sending file attachments to MoinMoin wikis from the command line
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