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A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

Python 70 11 Updated Aug 8, 2024
R 6 2 Updated Nov 12, 2022

CLEAN: a contrastive learning model for high-quality functional prediction of proteins

Python 264 54 Updated Apr 6, 2025

A scalable high-throughput metabolic and biogeochemical functional trait profiler

Perl 196 48 Updated Jan 27, 2025

MicrobeCensus estimates the average genome size of microbial communities from metagenomic data

Python 1 Updated Apr 14, 2020

🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

Perl 417 97 Updated Dec 31, 2023
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