Stars
scripts for data pulls and analysis related to the pepsickle proteasomal cleavage paper
A context aware tool for proteasomal cleavage predictions
Deep learning framework for proteomics
DL model to predict HLA peptide presentation
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
Westlake-OmicsAI / NovoBench
Forked from jingbo02/NovoBench[NeurIPS 2024] Benchmark denovo peptide sequencing algorithms
DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.
De novo peptide sequencing for DDA and DIA by deep learning
Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data
Distributed computing platform for parallel DDA/DIA protein/peptide identification
De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
De novo protein sequencing by combining top-down and bottom-up mass spectrometry
An Accurate, Robust, and High-Throughput Solution for Mass Spectrometry-Based De Novo Sequencing of Monoclonal Antibodies
Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.